Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1504 ATGGAATTCGACGACGAGCACGAAGACCAAGACGATGAAATAATGGAAGAGATGCCCATCGCCCACCACTACGACTCGTTCGGTAACTCAGCTTCGACTCGGCCAAAACCCGGAGAGGGGTCATCGGCGGCGAGGAAGAGCGGCGGCGGAGGGAATATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGGCACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAGGAAGGCAGTATAGATGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCGATTCAGATCAGGGACATTACTACTACCACCACCACCACCAGCAACAGTTTTCTTCTTACCGTGGGCCCCCACAGCCGTCGGCTTACGTGTACTTGACGGGGGCCCCAGTTCAGCAGAGGCCGTTGGCGTTGCCGGCGGCAGCGGCGTCGGGGAGGGAGGAGGACGACGCGTCGAATCCGAGCAGCAGCGGCGGCGGAGGAGGCGGCGGCGGAGGAAGTGGGTTGTTGAAGAAGAGATTCAGGACAAAGTTCAGCCAAGAGCAGAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTGGGATGGACAATTCAGAAACACGACGAAGCTGACGTGGAACGGTTCTGCTCGGAAACCGGAGTCCGGCGGCAGGTTCTAAAGGTATGGATGCACAACAACAAGCATACTTTAGGGAAGAAACCCTAG 738 56.5 MEFDDEHEDQDDEIMEEMPIAHHYDSFGNSASTRPKPGEGSSAARKSGGGGNIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHHHHQQQFSSYRGPPQPSAYVYLTGAPVQQRPLALPAAAASGREEDDASNPSSSGGGGGGGGGSGLLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCSETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33734557 33735294 + Maker00033802 Lcy13g1504 651809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1504 245 Gene3D - 166 243 - -
Lcy13g1504 245 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Lcy13g1504 245 MobiDBLite consensus disorder prediction 1 15 - -
Lcy13g1504 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Lcy13g1504 245 FunFam Zinc-finger homeodomain protein 2 177 243 - -
Lcy13g1504 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy13g1504 245 SUPERFAMILY Homeodomain-like 167 243 IPR009057 -
Lcy13g1504 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
Lcy13g1504 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Lcy13g1504 245 MobiDBLite consensus disorder prediction 149 181 - -
Lcy13g1504 245 MobiDBLite consensus disorder prediction 1 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1504 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2005 Lcy-Chr10:44163304 Lcy13g1504 Lcy-Chr13:33734557 7.66E-22 dispersed
Lcy13g1504 Lcy-Chr13:33734557 Lcy1g0708 Lcy-Chr1:6058574 2.91E-53 dispersed
Lcy1g0823 Lcy-Chr1:7009942 Lcy13g1504 Lcy-Chr13:33734557 1.25E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19399 None None None None Lcy TF