Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1504 ATGGAATTCGACGACGAGCACGAAGACCAAGACGATGAAATAATGGAAGAGATGCCCATCGCCCACCACTACGACTCGTTCGGTAACTCAGCTTCGACTCGGCCAAAACCCGGAGAGGGGTCATCGGCGGCGAGGAAGAGCGGCGGCGGAGGGAATATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGGCACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAGGAAGGCAGTATAGATGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCGATTCAGATCAGGGACATTACTACTACCACCACCACCACCAGCAACAGTTTTCTTCTTACCGTGGGCCCCCACAGCCGTCGGCTTACGTGTACTTGACGGGGGCCCCAGTTCAGCAGAGGCCGTTGGCGTTGCCGGCGGCAGCGGCGTCGGGGAGGGAGGAGGACGACGCGTCGAATCCGAGCAGCAGCGGCGGCGGAGGAGGCGGCGGCGGAGGAAGTGGGTTGTTGAAGAAGAGATTCAGGACAAAGTTCAGCCAAGAGCAGAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTGGGATGGACAATTCAGAAACACGACGAAGCTGACGTGGAACGGTTCTGCTCGGAAACCGGAGTCCGGCGGCAGGTTCTAAAGGTATGGATGCACAACAACAAGCATACTTTAGGGAAGAAACCCTAG 738 56.5 MEFDDEHEDQDDEIMEEMPIAHHYDSFGNSASTRPKPGEGSSAARKSGGGGNIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHHHHQQQFSSYRGPPQPSAYVYLTGAPVQQRPLALPAAAASGREEDDASNPSSSGGGGGGGGGSGLLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCSETGVRRQVLKVWMHNNKHTLGKKP 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33734557 33735294 + Maker00033802 Lcy13g1504 651809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1504 245 Gene3D - 166 243 - -
Lcy13g1504 245 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Lcy13g1504 245 MobiDBLite consensus disorder prediction 1 15 - -
Lcy13g1504 245 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Lcy13g1504 245 FunFam Zinc-finger homeodomain protein 2 177 243 - -
Lcy13g1504 245 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy13g1504 245 SUPERFAMILY Homeodomain-like 167 243 IPR009057 -
Lcy13g1504 245 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
Lcy13g1504 245 NCBIfam homeobox domain, ZF-HD class 182 238 IPR006455 -
Lcy13g1504 245 MobiDBLite consensus disorder prediction 149 181 - -
Lcy13g1504 245 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2005 Lcy-Chr10:44163304 Lcy13g1504 Lcy-Chr13:33734557 7.66E-22 dispersed
Lcy13g1504 Lcy-Chr13:33734557 Lcy1g0708 Lcy-Chr1:6058574 2.91E-53 dispersed
Lcy1g0823 Lcy-Chr1:7009942 Lcy13g1504 Lcy-Chr13:33734557 1.25E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19399 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1504 - - - 0.0