Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1509 ATGGCTCGCCCTTTCTCCGGCGTCAACACCGCTAAAACCCCCGCCGTCAAGCTCCCTATTTCCGTTTCCTCTATCACTTCAGCCTCCCTCTTCAGAGGCAAAACGAGGATGAGGATGCTCTCAGCCACCTCTTCTTCCTCTCCGGCGAAGGCGAGCCTGACCCACCGTCAAGACTCGCCGCGTAATATGTCCTTAGATGCTTTGATCAAAGGGGATCGCAGAGAGGAGGTCGTCGGCGCCATTGACAAGTCTTTGTCCAACTGTCTCTCTGAGACGAATCTTCACTTGACCGTTCCTGGGATTAAGTCCAAAACCAGGGGCAAGGTGAGAGATATATATGACTATGGGGATTATCTTATTTTGGTTACAACTGATCGACAGAGTGCGTTTGATAGAGTTCTTGCTTCCATACCTTTTAAGGGCCAGGTTCTTAACGAGACCAGTTTGTGGTGGTTTGACAGAACGCAGCACATTACTTCAAATGCTGTTGTGTCAGTCCCGGATAAAAACGTCACGATTGCAAAGAAGTGTTCAGTTTTTCCTGTTGAGTTTGTTGTTAGAGGATTTGTCACTGGAAGTACCGATACATCATTATGGACGGTGTACAAGAAAGGGGTGCGAAACTACTGTGGAAATGTTCTTCCAGATGGCTTGGTTAAAAATCAAAAGCTTTCTGCCAATATACTCACTCCAACAACCAAGGCTGCTACTCATGATGTTCCTGTGACACCAGATGAGATCATTGAACAGGGGCTTATGACTCAAGTTGATTATGATGAAGCAAGTAGAAAGGCATTAAGCTTGTTCGAGTATGGGCAGAAAGTGGCTTTGGAGCATGGTATGATACTGGTTGACACAAAGTATGAGTTTGGAAAGGGAGAGGATGGATCTGTTCTTTTAATTGATGAGGTGCATACACCGGATTCGAGCAGATATTGGATTGCACAATCCTATGAGGAACGCTTTCAAAATGGCCTTGAACCTGAAAATGTTGACAAGGAATTCTTGAGGTTGTGGTTCAAAGATAATTGCAATCCATATGAAGATGAGGTTCTCCCAGATGCTCCTGAAGAGCTCGTCCGGGAACTGTCATGGCGATATATCTTCTTGTACGAGACAATAACCAAATCCAAATTTGAGGTGCCATTGTCAGAGGAACCAATACATGATCGGATATCACGGAATGTTAAAACGGCACTGGCATCGCTAAAGTGA 1215 45.35 MARPFSGVNTAKTPAVKLPISVSSITSASLFRGKTRMRMLSATSSSSPAKASLTHRQDSPRNMSLDALIKGDRREEVVGAIDKSLSNCLSETNLHLTVPGIKSKTRGKVRDIYDYGDYLILVTTDRQSAFDRVLASIPFKGQVLNETSLWWFDRTQHITSNAVVSVPDKNVTIAKKCSVFPVEFVVRGFVTGSTDTSLWTVYKKGVRNYCGNVLPDGLVKNQKLSANILTPTTKAATHDVPVTPDEIIEQGLMTQVDYDEASRKALSLFEYGQKVALEHGMILVDTKYEFGKGEDGSVLLIDEVHTPDSSRYWIAQSYEERFQNGLEPENVDKEFLRLWFKDNCNPYEDEVLPDAPEELVRELSWRYIFLYETITKSKFEVPLSEEPIHDRISRNVKTALASLK 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33786079 33790950 + Maker00033787 Lcy13g1509 651814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1509 404 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 91 183 - -
Lcy13g1509 404 ProSitePatterns SAICAR synthetase signature 2. 283 291 IPR018236 GO:0004639(InterPro)|GO:0006164(InterPro)
Lcy13g1509 404 SUPERFAMILY SAICAR synthase-like 95 379 - -
Lcy13g1509 404 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 39 400 - GO:0004639(PANTHER)|GO:0005737(PANTHER)|GO:0006189(PANTHER)|GO:0009570(PANTHER)
Lcy13g1509 404 Pfam SAICAR synthetase 105 350 IPR028923 -
Lcy13g1509 404 ProSitePatterns SAICAR synthetase signature 1. 179 193 IPR018236 GO:0004639(InterPro)|GO:0006164(InterPro)
Lcy13g1509 404 CDD SAICAR_synt_Sc 106 375 - -
Lcy13g1509 404 Gene3D - 183 325 - -
Lcy13g1509 404 Gene3D Phosphorylase Kinase; domain 1 89 182 - -
Lcy13g1509 404 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 101 365 IPR028923 -
Lcy13g1509 404 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 179 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1509 K01923 - - csv:101217870 740.339
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g472 . . . . . . . . Cmo05g00551 . . . . . Sed04g0177 . . Bhi04g00801 Tan02g2438 Cmetu03g0642 . Hepe10g0459 . Lcy13g1509 Cla08g01141 Cam08g1600 Cec08g1171 Cco08g1298 Clacu08g1300 . Cre08g1083 . . Cone17ag1194 . . . . Cme03g01831 Blo17g00106 . . . . Bpe14g00472 . Bma02g00124 . . . . Cma05g00522 Car05g00473 . . . . . . . . . . . . . . . . . Lsi08g00999 Csa02g02183 Chy03g01334 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011405 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 3 1 31