Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1511 ATGAAACGCCTCGGCTGGTTAGGGCTGTGCCGGCGGAAATTGCTTTCATCTGTAGCCGTAGGGTCGTCCATTGATCAACAACTCTCGCACGGAAAAGTTACATCGTTACGCCAATTCTTTTCTTGTGCCCGAGCTTTGCAAGCATGTCCATCTGCCGTCGGGAAAGCTCCTGATTTTGCCACAGTATTACCGGCGAGCAGATGTTACATACATGGCACAGGTGTTCATGTCATTCCATTGAACGAGATTACTATGAAATTCTCGGGGTTCAAGACAATGCCAGTCGAGAAGAGATTAAAAAGGCGTACCATGCGATACTTCATTGTTCTTATTCACTTGCTAAGCATTATTGATTATAATGTGCAGTTGGCCAAACAGTACCATCCGGATGCAAATAGGAACAACCCTTCTGCAAAGAGGAAGTTTCAGGAGATAAGAGAAGCCTATGAGACTCTGCAGGATTCTGAGAAGAGAGCCCAATATGACCAGAGGCGTGGTGGAGATTTTGAAAATGTAGGGTTTGGTACTGCTGACGCAGAGGGGTTTAGCTATACTTATCGGACCCATTTTTCTGACTCATTTCAAAAGATTTTCTCTGAGATCTTTGAACATGAGACCAGCCGTTTTGCCTCAGATATTCAGGTGGACCTGTCATTATCTTTTACCGAAGCTGCAAAAGGATGCACAAAGCATTTGTCCTTTGATGCTTTGGTTCCCTGTGATTCTTGCTATGGGCGTGGCTATCCAGTAAATGCAACGAAAAGAAGTTGCCCTACTTGCAGAGGTTTAGGTAGAGTTACCATTCCTCCATTTACATCGACATGCACCACTTGCAAAGGATCGGGTCAAATCATTAAGGAATTATGTGCGCAATGCAGAGGAATGGGGGTTGTCGAGGGTGTCAAGGAGGTCACAGTTACTATACCTGCTGGTTGGTCACAACCACTTGATTTAGTTTATCATGTTGCTGAAGATCGTGTCTTTAAGAGGGATGGTGTGGATATTTATGTGGATTCTAATATCAGCTTTACTCAAATTCCAAAAGGAGTTCAGCCAGGACAACTTGTATTACTGAGAGGGAAAGGATTGCCGAAACATGGACTTTTTGTTGATCGTGGAGACCAATACGTCCAATTCCGTATTAGATTTCCAACGTAG 1158 44.13 MKRLGWLGLCRRKLLSSVAVGSSIDQQLSHGKVTSLRQFFSCARALQACPSAVGKAPDFATVLPASRCYIHGTGVHVIPLNEITMKFSGFKTMPVEKRLKRRTMRYFIVLIHLLSIIDYNVQLAKQYHPDANRNNPSAKRKFQEIREAYETLQDSEKRAQYDQRRGGDFENVGFGTADAEGFSYTYRTHFSDSFQKIFSEIFEHETSRFASDIQVDLSLSFTEAAKGCTKHLSFDALVPCDSCYGRGYPVNATKRSCPTCRGLGRVTIPPFTSTCTTCKGSGQIIKELCAQCRGMGVVEGVKEVTVTIPAGWSQPLDLVYHVAEDRVFKRDGVDIYVDSNISFTQIPKGVQPGQLVLLRGKGLPKHGLFVDRGDQYVQFRIRFPT 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33791071 33800661 + Maker00034217 Lcy13g1511 651816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1511 385 Gene3D DnaJ domain 118 211 IPR036869 -
Lcy13g1511 385 CDD DnaJ 122 154 IPR001623 -
Lcy13g1511 385 Pfam DnaJ domain 122 162 IPR001623 -
Lcy13g1511 385 Pfam DnaJ central domain 240 296 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Lcy13g1511 385 PRINTS DnaJ domain signature 137 157 IPR001623 -
Lcy13g1511 385 PRINTS DnaJ domain signature 157 176 IPR001623 -
Lcy13g1511 385 PRINTS DnaJ domain signature 120 135 IPR001623 -
Lcy13g1511 385 SUPERFAMILY Chaperone J-domain 122 187 IPR036869 -
Lcy13g1511 385 CDD DnaJ_zf 240 296 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Lcy13g1511 385 CDD DnaJ_C 211 385 - -
Lcy13g1511 385 ProSitePatterns Nt-dnaJ domain signature. 142 161 IPR018253 -
Lcy13g1511 385 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 227 298 IPR036410 -
Lcy13g1511 385 Gene3D - 240 296 - -
Lcy13g1511 385 Gene3D - 212 324 - -
Lcy13g1511 385 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 122 384 - GO:0005737(PANTHER)|GO:0042026(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)
Lcy13g1511 385 Pfam DnaJ C terminal domain 319 384 IPR002939 -
Lcy13g1511 385 SUPERFAMILY HSP40/DnaJ peptide-binding domain 211 384 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Lcy13g1511 385 ProSiteProfiles dnaJ domain profile. 83 165 IPR001623 -
Lcy13g1511 385 ProSiteProfiles Zinc finger CR-type profile. 227 301 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Lcy13g1511 385 SMART dnaj_3 117 157 IPR001623 -
Lcy13g1511 385 Gene3D - 339 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1511 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1511 Lcy-Chr13:33791071 Lcy13g1519 Lcy-Chr13:33908749 7.32E-61 dispersed
Lcy7g1205 Lcy-Chr7:14552326 Lcy13g1511 Lcy-Chr13:33791071 8.05E-06 dispersed
Lcy13g1511 Lcy-Chr13:33791071 Lcy13g1514 Lcy-Chr13:33839990 2.25E-61 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g470 . . Bda01g00899 . . . . . Cmo05g00549 . . . . . . . . Bhi04g00799 . . . . . Lcy13g1511 Cla08g01139 Cam08g1598 Cec08g1169 Cco08g1296 Clacu08g1298 . Cre08g1081 . Cone7ag1258 . . . . . Cme03g01833 . Blo18g00120 . . . . Bma01g01394 . . . . . Cma05g00520 Car05g00471 . . . . . . . . . . . . . . . . . Lsi08g00997 Csa02g02181 Chy03g01336 .