Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1533 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTCAGTTATGTTTGCAGAGATTTCTGTTCTTACTCTGGAGCTTGGCCCGCCTACGATTACGCCTTCCAATTAGAGCAAGAAAAAACCTTTCTTGGTGACGACCAGAAATTGCCCGCTAATTGGGACGCTTCACCGGACGAATGTTCCATCAATCAGCCGCTCCCCGGAGGTCCTCTGTACCCGCCGGTGGAAGTCGAACCCACGCCGCCACCGCCGCCGCCGACCACCGGCAGGAGAAAGCGGCGGCGGACTCGGAGCACGAAAAACAAGGAGGAAATTGAAAACCAGAGGATGACCCACATCGCCGTCGAGCGCAACCGCCGGAAACAAATGAATGATTATCTGGCCGTCCTCCGATCACTAATGCCGTCTTCTTACGTTCAAAGGGGAGACCAAGCCTCCATTATTGGTGGCGCCATTAACTTTGTCAAGGAATTAGAGCAGCAATTGCAATTCATCAAGGCCCATAAGGAAACAGCTTCTTCCTCCCCAATTGAAAATAACGCTTCTCCTTTCGCCGACTTCTTTTCCTTTCCTCAGTTCTCAACTCGTGCGACTCAGTGCAAGAACTCGGGCCATGACTCGGCCATGCCGGCTCACACCCAATGGGCCGCCGGAGATATTGAAGTCACCATGGTCGACAGCCATGCCAACCTTAAAATACTGTCCCAGAAACGCCCTAGGCAGCTTCTCAAAATGGTGGCTGGGTTTCAAAGCTTGAGACTCACTATTCTTCATCTCAATGTCACCACTTTGGATCAAATGGTTCTTTACTCTGTGAGCATCAAGGTTGAGGAAGGATGCCAGTTGAATACAGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTTTCCATACAAGAGGAAGCTGCTTTCAGCTGA 924 50.11 MMALETVVYPQDTFSYVCRDFCSYSGAWPAYDYAFQLEQEKTFLGDDQKLPANWDASPDECSINQPLPGGPLYPPVEVEPTPPPPPPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKETASSSPIENNASPFADFFSFPQFSTRATQCKNSGHDSAMPAHTQWAAGDIEVTMVDSHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTLDQMVLYSVSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAAFS 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34142235 34144164 + Maker00034062 Lcy13g1533 651838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1533 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 175 IPR036638 GO:0046983(InterPro)
Lcy13g1533 307 Gene3D - 92 174 IPR036638 GO:0046983(InterPro)
Lcy13g1533 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 159 IPR011598 GO:0046983(InterPro)
Lcy13g1533 307 PANTHER MAX DIMERIZATION, MAD 62 297 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g1533 307 MobiDBLite consensus disorder prediction 68 88 - -
Lcy13g1533 307 Pfam Helix-loop-helix DNA-binding domain 109 160 IPR011598 GO:0046983(InterPro)
Lcy13g1533 307 Coils Coil 156 176 - -
Lcy13g1533 307 SMART finulus 114 165 IPR011598 GO:0046983(InterPro)
Lcy13g1533 307 MobiDBLite consensus disorder prediction 48 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2152 Lcy-Chr11:45076477 Lcy13g1533 Lcy-Chr13:34142235 3.09E-48 dispersed
Lcy12g1955 Lcy-Chr12:40917430 Lcy13g1533 Lcy-Chr13:34142235 2.88E-61 dispersed
Lcy13g1533 Lcy-Chr13:34142235 Lcy4g1889 Lcy-Chr4:45066112 1.12E-71 dispersed
Lcy13g1533 Lcy-Chr13:34142235 Lcy13g0509 Lcy-Chr13:6281553 8.38E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19400 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1533 - - - 0.0