Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1534 ATGGCGGTCACTATTAGCAGAAAACTTTACCCTGTTGCTACAGGAACTAACCAACAAAACACCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTACGGTTTTCCAGATTTCTACTTGTCGCCGCCGCCGCCTCCTCCTTACGCCGACCACCAAAATAATCCACTTCAACCTTTAACCATCGTCCTGATTGCTCTGTTTGTCGGGGTTTTCTTCGCTTTCAGTTTCTATATCGTGGTCGTTAAATGCCGGGCCTGCTGCAGTGGCTCCCGGAACAGGGGGGAGGAGCCGTCGCAATCGGACGGCGGAGAGGGAGAGTTTCTGCACGAGAATCAAGTCGATCATCCAATTTGGTTCATCACCACGGTCGGGCTGCAGCAATCGGTCATCAATTCGATCACGGTTTGCAAGTACAAGAAAGGCGAAGGTCTGATCGAAGGAACAGAGTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGAAGAAATGCTTCGGCTGTTGCCCAAATGCAGCCACGCCTTCCATATTGGCTGTGTGGATACTTGGCTGAGAACCCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTGACTGATTTTGCGACCTCCAACACTGTGAGGCCATCGAATTTGAGTCCTGTGGTTCAAAACGAAGCCAATTCGGGTGTAACTGAACAGACCCAGATGGAAAATGGAGAGACTAATGGCGAAGTTGTGAGGGAAAATCAGGGAGTTGTTTCAGGTGGAAGCTTTGAAAACAGAGGAGATGCTGTTGATGAACAGAGAGCAGTTGGGATTCAGATTGAGGAGATAGTTCCAAAAGAGGGAAATTTTGAAGCTGATGACTCTATTGAAAATGGTGAAGTTGAAGGAAATGAGACTTTGAGGAACAATCAGATGGATTCTTCTTCTGCTGATTGTGAAGAAGGTAGATCAGTTAAAACAGCTACATGA 957 47.44 MAVTISRKLYPVATGTNQQNTNCSACPYDCPFDCYGFPDFYLSPPPPPPYADHQNNPLQPLTIVLIALFVGVFFAFSFYIVVVKCRACCSGSRNRGEEPSQSDGGEGEFLHENQVDHPIWFITTVGLQQSVINSITVCKYKKGEGLIEGTECSVCLSEFQEEEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFATSNTVRPSNLSPVVQNEANSGVTEQTQMENGETNGEVVRENQGVVSGGSFENRGDAVDEQRAVGIQIEEIVPKEGNFEADDSIENGEVEGNETLRNNQMDSSSADCEEGRSVKTAT 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34148868 34149824 - Maker00034031 Lcy13g1534 651839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1534 318 FunFam RING-H2 finger protein ATL54 127 200 - -
Lcy13g1534 318 CDD RING-H2_EL5-like 151 194 - -
Lcy13g1534 318 PANTHER RING-H2 FINGER PROTEIN ATL16 45 262 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Lcy13g1534 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Lcy13g1534 318 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lcy13g1534 318 SMART FANCL_C_2 148 202 - -
Lcy13g1534 318 MobiDBLite consensus disorder prediction 291 318 - -
Lcy13g1534 318 Pfam Ring finger domain 151 194 IPR001841 -
Lcy13g1534 318 SUPERFAMILY RING/U-box 145 201 - -
Lcy13g1534 318 MobiDBLite consensus disorder prediction 277 318 - -
Lcy13g1534 318 SMART ring_2 152 193 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1534 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1812 Lcy-Chr11:41901307 Lcy13g1534 Lcy-Chr13:34148868 4.05E-41 dispersed
Lcy13g0630 Lcy-Chr13:8397216 Lcy13g1534 Lcy-Chr13:34148868 1.29E-20 dispersed
Lcy13g1534 Lcy-Chr13:34148868 Lcy4g0071 Lcy-Chr4:1043588 9.74E-45 dispersed
Lcy13g1532 Lcy-Chr13:34106007 Lcy13g1534 Lcy-Chr13:34148868 3.78E-18 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29