Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1545 ATGGCTGCCGCCCCCTCTGTTCGTGAGGAGAATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTCTCTGCTTCCATCGACAAGGAGGAGCTTACCGTCGAGGAGAGAAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCTCGCAGGGCTTCCTGGCGTATCATTTCCTCCATCGAGCAGAAGGAGGAGAGCCGAGGCAACGACGACCACGTCTCTGTCATCCGTGACTACAGATCCAAAATTGAGAGCGAGCTCTCCAATATCTGCGATGGAATCCTCAAACTCCTCGATTCCAGACTCATTCCCTCCGCCGCCTCCGGAGATTCCAAGGTCTTTTACCTCAAAATGAAGGGCGATTACCACAGATACCTGGCCGAATTCAAAACCGGTGCCGAACGGAAGGAAGCCGCCGAGAGTACCCTCACTGCCTACAAAGCCGCTCAGGATATTGCAAACGCTGAGTTGCCTCCTACACATCCGATCCGACTTGGATTGGCCCTTAACTTCTCTGTATTCTACTATGAAATTTTGAATTCTCCTGATCGTGCCTGCAGTCTTGCAAAACAGGCTTTTGATGAAGCTATCGCTGAGTTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTGATCATGCAACTTCTTCGCGATAACCTCACTCTCTGGACGTCGGACATGCAGGATGACAACGCCGATGAGATTAAAGAAGCTCCTCCGAAGCGCGAGGATGAAAAGCAGTGA 786 52.16 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASIDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDNADEIKEAPPKREDEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34264363 34266734 - Maker00033880 Lcy13g1545 651850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1545 261 MobiDBLite consensus disorder prediction 243 261 - -
Lcy13g1545 261 Coils Coil 14 34 - -
Lcy13g1545 261 SMART 1433_4 8 251 IPR023410 -
Lcy13g1545 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Lcy13g1545 261 PIRSF 14-3-3 2 250 IPR000308 -
Lcy13g1545 261 Gene3D - 2 251 IPR036815 -
Lcy13g1545 261 FunFam 14-3-3 protein epsilon 4 251 - -
Lcy13g1545 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Lcy13g1545 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Lcy13g1545 261 MobiDBLite consensus disorder prediction 242 261 - -
Lcy13g1545 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Lcy13g1545 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Lcy13g1545 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Lcy13g1545 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Lcy13g1545 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Lcy13g1545 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Lcy13g1545 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Lcy13g1545 261 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1545 Lcy-Chr13:34264363 Lcy9g1731 Lcy-Chr9:42510263 2.93E-112 dispersed
Lcy13g1460 Lcy-Chr13:33156297 Lcy13g1545 Lcy-Chr13:34264363 2.99E-114 transposed
Lcy3g0403 Lcy-Chr3:13416201 Lcy13g1545 Lcy-Chr13:34264363 3.03E-148 transposed
Lcy13g1545 Lcy-Chr13:34264363 Lcy9g1719 Lcy-Chr9:42390305 3.61E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1545 K06630 - csv:101220164 504.212