Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1546 ATGGCAACGAATAAAGTGCAATTGCTGTATAATATCTGCAACGAGATTTTTTCTCATAAAAACCCTCCCACTTTTCAACAATTACACTCCCTCAAAACCCATCTCGGTAGTACAAAACTCCCCCAACATTTATACGGAATCAAAGCTGCAGATGTTGGAATTGAAGAGTTGGAAGAGCCAGAATCGTCAATTGTGAGCCCCAGGGGATTGATTTACGCCAAGGGACTTCCAGAAATAACATACATCCACATCCACGAATGCGACTTGTTCTCTATTGGAATATTCTGTTTCCCTGAAGGCGGGGCGCTGCCGTTGCACGACCATCCGGGGATGACGGTGATGAGCAAGGTCCAGGATTCGGAATCCAGATTCGACACCGACGGTCCTGGTAATTCTCCTACGACTTGGCGAATCCGAATTCTGAATCCTGGAGTTGGGGCGGTGATGGACGGAGTTTGGAGTGCGCGATGTGAAGCGAGGGCTCTGTTTCCGACGAGTGGAGGGAACATTCATTCGTTTAGGGCAATGTCGGCGTGTGCCATTTTGGACGTCTTGTCTCCGCCGTATTCTGAAGAGCTTGGAAGGCCTTCCACTTACTTCTCCGACTTACCCATCCCAACTCTTCCC 627 48.96 MATNKVQLLYNICNEIFSHKNPPTFQQLHSLKTHLGSTKLPQHLYGIKAADVGIEELEEPESSIVSPRGLIYAKGLPEITYIHIHECDLFSIGIFCFPEGGALPLHDHPGMTVMSKVQDSESRFDTDGPGNSPTTWRIRILNPGVGAVMDGVWSARCEARALFPTSGGNIHSFRAMSACAILDVLSPPYSEELGRPSTYFSDLPIPTLP 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34281146 34282125 + Maker00033795 Lcy13g1546 651851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1546 209 CDD cupin_ADO 88 190 - -
Lcy13g1546 209 PANTHER UNCHARACTERIZED 4 201 IPR012864 GO:0016702(InterPro)
Lcy13g1546 209 Gene3D Jelly Rolls 72 202 IPR014710 -
Lcy13g1546 209 SUPERFAMILY RmlC-like cupins 2 200 IPR011051 -
Lcy13g1546 209 Pfam PCO_ADO 46 207 IPR012864 GO:0016702(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1546 K23953 - - mdm:103436355 198.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1546 Lcy-Chr13:34281146 Lcy1g1705 Lcy-Chr1:17829786 2.21E-33 dispersed
Lcy13g1546 Lcy-Chr13:34281146 Lcy1g0264 Lcy-Chr1:2392581 3.17E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g441 . . . . . . . . . . . . . . . . . Bhi04g00776 Tan02g2409 . . . . Lcy13g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00979 . . .