Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1561 ATGGAGAAGGAGAGGGAGCAGCTTGTTTACTTGGCCAGACTTGCCGAACAAGCAGAGAGATACGATGAAATGGTGGAAATGATGAAGAGTGTCGCGAAGTTGGACGTAGAACTTTCTGTGGAGGAGAGGAACCTGGTCTCTGTGGGATATAAGAACGTTATTGGGGCGAGAAGAGCCTCATGGCGTATTTTATCTTCTATTGAACAAAAGGAGGAAGGAAAGAAGAATGAGGTTAATGTGAAGAGGGTAAAGGAGTACAGGCAGAGGGTTGAAGACGAACTGGCGAGAATTTGCCACGACATCTTATCAGTTGTTGACAAGCATCTCATTCCGTCGTCATCCTCAGGAGAATCCAATGTTTTTTACTATAAGATGAAAGGGGATTATAACCGATACTTGGCAGAGTTTAAATCTGGCCAAGAACGTGAAGAGGCTGCAGATCAGTCGATGAAGGCCTATGAGTCTGCCTCAAGCATTGCAACCTCTGATCTGCCTCCAACACATCCCATCAGACTTGGCTTGGCGCTTAACTTTTCTGTTTTCTACTATGAGATATTAAATTCCCCAGAGAGGTTGGTTTTATCTCTTAATCTATCTGTTAGGGCATGCCACCTTGCTAAACAAGCTTTTGATGATGCTATAGCTGAGCTCGACGGCCTCAATGAAGAATCCTACAAGGACAGTACCCTCATCATGCAGCTGCTGAGGGATAATCTCACGTTATGGACCTCGGATCTCCCAGATGAGGGAGTCGATGGGCCAAGCTGTGCTGTGAGCAATCTAAAGCTGCTGATGAACCTTGAGCAGAGGCAAGATATTCGAGCTGTCTTTGGAGCCAGG 840 46.07 MEKEREQLVYLARLAEQAERYDEMVEMMKSVAKLDVELSVEERNLVSVGYKNVIGARRASWRILSSIEQKEEGKKNEVNVKRVKEYRQRVEDELARICHDILSVVDKHLIPSSSSGESNVFYYKMKGDYNRYLAEFKSGQEREEAADQSMKAYESASSIATSDLPPTHPIRLGLALNFSVFYYEILNSPERLVLSLNLSVRACHLAKQAFDDAIAELDGLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGVDGPSCAVSNLKLLMNLEQRQDIRAVFGAR 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34461817 34465527 + Maker00033912 Lcy13g1561 651866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1561 280 PIRSF 14-3-3 1 253 IPR000308 -
Lcy13g1561 280 Gene3D - 1 252 IPR036815 -
Lcy13g1561 280 ProSitePatterns 14-3-3 proteins signature 2. 225 244 IPR023409 -
Lcy13g1561 280 FunFam 14-3-3 protein epsilon 1 255 - -
Lcy13g1561 280 SMART 1433_4 5 256 IPR023410 -
Lcy13g1561 280 PANTHER 14-3-3 PROTEIN 4 248 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Lcy13g1561 280 SUPERFAMILY 14-3-3 protein 4 245 IPR036815 -
Lcy13g1561 280 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Lcy13g1561 280 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Lcy13g1561 280 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Lcy13g1561 280 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Lcy13g1561 280 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Lcy13g1561 280 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Lcy13g1561 280 Pfam 14-3-3 protein 11 243 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1561 Lcy-Chr13:34461817 Lcy3g0403 Lcy-Chr3:13416201 1.59E-110 dispersed
Lcy4g0704 Lcy-Chr4:8511065 Lcy13g1561 Lcy-Chr13:34461817 1.38E-123 transposed
Lcy7g0331 Lcy-Chr7:2797651 Lcy13g1561 Lcy-Chr13:34461817 1.85E-99 transposed
Lcy13g1561 Lcy-Chr13:34461817 Lcy9g1731 Lcy-Chr9:42510263 1.62E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1561 K06630 - csv:101222677 429.869