Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1562 ATGACAAGGTGCTTCTTCTTCAGCATCACAGAGACCAAGAATTGGTGCCATCGCCGTAGCTTCATCAAATGTGGCCTCCGATCCACCATTACAGACCTCAAAGACGGCACCACAGTTCATTGCTGGGTTCCCAAGAACCCAGTTGAATCTAAGCCTAATCTGCTTCTAATCCATGGCATTGGGGCTAATGCACTTTGGCAATGGGGGGATGTGATTGGTGGCCTCGTAGCTCATTTCAATGTCTACGTGCCGGATTTGATCTTCTTTGGCGACTCCTTCACCACTCGGCCGGAAAGGACAGAGTGGTTTCAAGCTCAGTGTTTAATGCGAGTGATGGAGGGCAACTCGGTGGGGAAATTCAGTTTGGTTGGGCTGAGCTATGGAGGGTTTGTTGGGTACAGCATGGCGGTGCTGTACCCAGAAATGGTGGAGAAAGTGGTGATTTGTTGTGCTGGGGTTTGTGTGGAAGAGAAGGATTTCAAAGATGGGTTGTTGAGAGTCTGTGATTTGGAGGAGGCCATAGCCATTTTAGTGCCCCAAAAGTCAGAGAAGCTCAAAGAGTTGGTGGGTTACTCGTTTTTCCGGCCGCCGCGGATGGGGCTGATGCCTTCTTGTTTGCTCAATGATTTCATTGAGCGAACAATGATACTCTGGGGAGAACATGATCAAGTATTTCCATTAGAATTGGGCCACAGATTGAAACGGCATTTGGAGGACAATGCTACGCTTGTAATTATCAAGAATGCAGGCCACGCCTTCAACTCAGAGGAGCCGAAGGAGTTTTTCAACCATTTGAAATCATTCCTGGTTGATTCATAG 819 48.11 MTRCFFFSITETKNWCHRRSFIKCGLRSTITDLKDGTTVHCWVPKNPVESKPNLLLIHGIGANALWQWGDVIGGLVAHFNVYVPDLIFFGDSFTTRPERTEWFQAQCLMRVMEGNSVGKFSLVGLSYGGFVGYSMAVLYPEMVEKVVICCAGVCVEEKDFKDGLLRVCDLEEAIAILVPQKSEKLKELVGYSFFRPPRMGLMPSCLLNDFIERTMILWGEHDQVFPLELGHRLKRHLEDNATLVIIKNAGHAFNSEEPKEFFNHLKSFLVDS 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34466485 34468326 - Maker00033955 Lcy13g1562 651867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1562 272 Pfam alpha/beta hydrolase fold 52 151 IPR000073 -
Lcy13g1562 272 SUPERFAMILY alpha/beta-Hydrolases 25 269 IPR029058 -
Lcy13g1562 272 PRINTS Alpha/beta hydrolase fold signature 78 93 IPR000073 -
Lcy13g1562 272 PRINTS Alpha/beta hydrolase fold signature 136 149 IPR000073 -
Lcy13g1562 272 PRINTS Alpha/beta hydrolase fold signature 122 135 IPR000073 -
Lcy13g1562 272 Gene3D alpha/beta hydrolase 22 271 IPR029058 -
Lcy13g1562 272 PANTHER SI:DKEY-122A22.2 213 269 IPR052370 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1562 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0106 Lcy-Chr13:1011355 Lcy13g1562 Lcy-Chr13:34466485 4.83E-10 dispersed
Lcy13g1562 Lcy-Chr13:34466485 Lcy6g1023 Lcy-Chr6:11094363 2.39E-112 dispersed
Lcy1g0801 Lcy-Chr1:6796710 Lcy13g1562 Lcy-Chr13:34466485 4.74E-103 wgd
Lcy13g1562 Lcy-Chr13:34466485 Lcy9g1732 Lcy-Chr9:42514545 3.84E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g411 . . . . . . . . Cmo05g00523 . . . . . Sed04g0141 . . Bhi04g00761 Tan02g2392 Cmetu03g0357 . Hepe10g0498 . Lcy13g1562 Cla08g01109 Cam08g1562 Cec08g1136 Cco08g1262 Clacu08g1266 . Cre08g1046 Cone4ag1334 . . . Lsi04g02234 . . Cme03g01864 Blo17g00119 Blo18g00257 . Bda13g01402 . Bpe14g00453 . Bma02g00142 . . . . Cma05g00500 . . Cpe11g00437 . Bhi09g02434 . . . . Mch11g0665 . Cla11g01381 . Cec11g1465 Cco11g1461 Clacu11g1596 Cmu11g1415 Cre11g1835 Lsi08g00965 Csa02g02150 Chy03g01368 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010572 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 32