Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1571 ATGGCGGAACGACAAGATTCTTCTTCCATCCATCTCGACGACGCCTTCGATTGTCTTCCAGATTCCCTCATTCTTCTCATTTTCAACGCCGTTTCCGATGTCAAAACCTTGATCCGTTGCAGAGCCGTCTCCAAGCGATTCAACTCCCTCGTTCCCCATTCCGATTCTCTCTCTCTCAAGGTCGATTGCGTCATTTCCTCCGACTCCGACGAAAATTCCTTCCTCTTCGGCTTCTTCAAATCCGTCGTCAAGTCCTTCTTCGATTTGATTTCCCCTATTCTCGTACAATCCGAGTCGCAGAACTCTCCGGCGAAAATCCTCCGCCAGTTCGCCCGGATCCACCGCCTCGAGATCGAGTTTCCGACGGGCGATCCCAAGGCCGAGAGAGTCGGGGGCGTTAAATGGAGAGCGGAGTTCGGGATTACGATGAGGAGCTGCGTGATTTTGATTTTTCGAGGGATTAGGGATTTGGATGATCGGGCCGCGATGGCGGAGGATTATTTCGATTTCATCGGGGGGCTGAAATCGAAGGTGTTCTGGACGATTAGCACGCTGATCACGGCGTCGGCGAGGCACCACGTGTTGACGGAGGTGGTGGAGGAGCATTTGGAGATGGAGAGCCTGGTTTTGCGAGACAGGGGAGGGGAAGGCGTGGTGGTGATGGAGAAGGACGGTTTAGAGGAATTGAGGAAATCGACAGAGCGCGGCGGCGGATTGGCGGCGGAGGGAGAGGAATGGCAGCGGACGAGAACGAGGGTTCCGAGCACGACGGTGAGGATGAGGCATCTGCCCCGGGTGGAGCTCCGGCGAGGACTCTGGATGGAGGACGCCACGTTGGTGGTGGTGAGGCCCACAGGAGATGCCAGCAAGGATGGGGCAGCCGACGTGGAGAAAGAGGACGAGGACGTGGCATCGAGGGCGTTTGAAGAAGGTGAAAACGTGTACAGAGAGGCAGTGAAAGCGTTACTGAAGAAGGGCAGGAGGTATCAGTTAGAAATGAACTCTTTCTAG 1011 55.49 MAERQDSSSIHLDDAFDCLPDSLILLIFNAVSDVKTLIRCRAVSKRFNSLVPHSDSLSLKVDCVISSDSDENSFLFGFFKSVVKSFFDLISPILVQSESQNSPAKILRQFARIHRLEIEFPTGDPKAERVGGVKWRAEFGITMRSCVILIFRGIRDLDDRAAMAEDYFDFIGGLKSKVFWTISTLITASARHHVLTEVVEEHLEMESLVLRDRGGEGVVVMEKDGLEELRKSTERGGGLAAEGEEWQRTRTRVPSTTVRMRHLPRVELRRGLWMEDATLVVVRPTGDASKDGAADVEKEDEDVASRAFEEGENVYREAVKALLKKGRRYQLEMNSF 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34544543 34545553 - Maker00033805 Lcy13g1571 651876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1571 336 SUPERFAMILY F-box domain 14 63 IPR036047 GO:0005515(InterPro)
Lcy13g1571 336 Gene3D - 5 57 - -
Lcy13g1571 336 PANTHER OS05G0510400 PROTEIN-RELATED 12 336 IPR044809 -
Lcy13g1571 336 Pfam F-box-like 16 52 IPR001810 GO:0005515(InterPro)
Lcy13g1571 336 CDD F-box_SF 17 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1571 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1571 Lcy-Chr13:34544543 Lcy6g0907 Lcy-Chr6:9232289 4.13E-59 dispersed
Lcy13g1571 Lcy-Chr13:34544543 Lcy5g1717 Lcy-Chr5:39665636 4.23E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g390 . . . . . . . . . . . . . Car12g00139 Sed04g0136 . Cpe07g00127 Bhi04g00750 Tan02g2380 Cmetu03g1402 . Hepe10g0511 . Lcy13g1571 Cla08g01100 Cam08g1554 Cec08g1127 Cco08g1254 Clacu08g1256 . Cre08g1038 . . . . . . . Cme03g01514 . . . . . . . . . . . Cma12g00151 . . . . . . . . . . . . . . . . . . . Lsi08g00957 . Chy03g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009181 2 1 1 1 1 1 1 1 1 1 1 1 3 1 1 2 1 0 3 1 1 1 1 1 1 1 1 1 1 0 34