Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1578 ATGGCTGCTTTGATGGATTTCTATGGTGGTTGCAGAGATTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCTTCTTCTTCTCCTTCTTCTTTTCTTCCTTCTTATTCTTCTTCTTCTTCCTCTTCCACTCCCGATTTCTCTTCTCCTTTCTGTTTCTCTTCTTCGATCCAAACAGAGTCCACTTCTTACCCTTCCGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGCGGGTTTTCGGCTCAAAACCTTCACGGTTTAGAGCAATCGGCCTCGATCGGACTCAACTACTTGACTCCCTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACTCAGATTCAGCCAGTTTGGGGACAGATCAACAACCAGCAAGAGCTATTGAAAAACCAGACCAACGGCGTGAATTTTCTTGGTCCGAAGGCGATTCCGATGAAACATATGGGATCTCCACCGAAATCGACGAAGCTTTATCGTGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTACCGAGGAACCGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCCTACGACAAAGCCGCTTACAAGCTCCGAGGCGATTTCGCCCGACTCAATTTCCCTCACCTGAAGCACAACGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTCCACTCCGCCGTCGACGCGAAGCTCGAAGCCATCTGTCAATCCCTGGCAGAGTCGCAAAAACAGGGGAAATCGGACCGATCTGCCTCGAGGAAGTCGAAATCGGCATCTTCCACGGTTGGATCGGAGTCTCAGGCGCCGACGGTGATCGATTCCGACGACGAACAGAAGGCGGCGGAGGTCAGATCGAGTGGATCGGAGATCTGTTGTAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGCGACGAGTCGGCAGGGTCTTCGCCTTTGTCGGATCTGACGTTCCCCGATCCGACAGATTCGCCATGGGAACAGCCATCGGAGAGCTCTATGTTGCAGAAATATCCGTCGGAAATCGATTGGGCTTCGATTTTCACATCATGA 1125 52.0 MAALMDFYGGCRDFQSDPFGGELMEALEPFMKAASSSSPSSFLPSYSSSSSSSTPDFSSPFCFSSSIQTESTSYPSDCSPPMTHLFSGGFSAQNLHGLEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQQELLKNQTNGVNFLGPKAIPMKHMGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHNGSSVGGDFGEYKPLHSAVDAKLEAICQSLAESQKQGKSDRSASRKSKSASSTVGSESQAPTVIDSDDEQKAAEVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESSMLQKYPSEIDWASIFTS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34614837 34615961 - Maker00034053 Lcy13g1578 651883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1578 374 CDD AP2 169 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 SMART rav1_2 170 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 Pfam AP2 domain 170 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677(InterPro)
Lcy13g1578 374 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 MobiDBLite consensus disorder prediction 313 362 - -
Lcy13g1578 374 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 371 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy13g1578 374 FunFam Ethylene-responsive transcription factor 2 169 228 - -
Lcy13g1578 374 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1578 374 MobiDBLite consensus disorder prediction 277 296 - -
Lcy13g1578 374 MobiDBLite consensus disorder prediction 263 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1578 K09286 - - csv:101222833 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1572 Lcy-Chr12:35792480 Lcy13g1578 Lcy-Chr13:34614837 1.88E-33 dispersed
Lcy13g0462 Lcy-Chr13:5524487 Lcy13g1578 Lcy-Chr13:34614837 6.52E-32 dispersed
Lcy13g1578 Lcy-Chr13:34614837 Lcy6g0809 Lcy-Chr6:8094494 9.60E-36 dispersed
Lcy9g1599 Lcy-Chr9:41162444 Lcy13g1578 Lcy-Chr13:34614837 1.16E-111 transposed
Lcy1g0776 Lcy-Chr1:6603495 Lcy13g1578 Lcy-Chr13:34614837 7.18E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19402 None None None None Lcy TF