Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1581 ATGTTTAATGCTCTATTTGCTCTTCCTTCCCTTAAACCCATTTCTGCATTTCTGACCGCCAGTATCCTGGATATTATTGCTCTGTCCTTCATAATGGCTGCTGCAGTATTTCACCAATCTCTTGGGACTTTTCTTCCCCACGGACAAGCTAATAGTACAAGTAATTTGACAAAGTTGAATTCAAAGTGTTTCAAGGTCGAAGTTGGGGTCTTGAGAAAGAAGTCTCCTAGATCTGGAAATACGAATCTAAGAGCAATTCAAGCGTCTTCTTCTCAAACTTCAGTTTTTGATCCCATTTCATCACCTTCAATCAGCACCACTGAAGACTCGCCCAAAAAACAGAATGAAGCAGCTTTGATCTTGATTCGACATGGAGAATCGTTGTGGAACGAAAAGAACTTATTTACCGGCTGTGTTGATGTGCCACTGACCAAGAAAGGTGTGGAAGAGGCAATTGAAGCTGGCAAGAGAATCAGCAACATACCTGTCGACATGATCTATACATCTTCGCTCATTCGTGCTCAGATGACTGCTATGCTTGCCATGACTCAACATCGTCGTAAGAAGGTTCCAGTTATTATTCATAATGAAACCGAGCAGGCAAGGGTCTGGAGTCAAATATATAGTGAAGAAACCAAAAAACAATCCATCCCAGTTATAGCGTCTTGGCGATTGAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAGGAGACTGCTGATAGATATGGAAAAGAACAAGTCCACAAATGGCGTCGGAGTTATGACATTCCTCCTCCCAATGGCGAGAGTTTGGAAATGTGTGCGAATAGAGCTGTTGCTTATTTTAAAGATCAAATTGTACCCCAGCTGCAATCTGGAAAGAACGTAATGATAGCAGCACATGGAAATTCATTGAGGTCCATAATCATGTATCTAGACAAACTAACTTCTCAGGAGGTTATTAGCTTAGAGTTATCAACTGGAATACCCATGCTCTACATATTTAAAGAAGGAAACTTCATTAGGAGGGGAAGTCCTGCAGGACCTTCTGAGGCAGGTGTTTACGCCTATACCAGGGATATTGCTTTCCCAATGCACTGCAACTATTAA 1098 41.62 MFNALFALPSLKPISAFLTASILDIIALSFIMAAAVFHQSLGTFLPHGQANSTSNLTKLNSKCFKVEVGVLRKKSPRSGNTNLRAIQASSSQTSVFDPISSPSISTTEDSPKKQNEAALILIRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSSLIRAQMTAMLAMTQHRRKKVPVIIHNETEQARVWSQIYSEETKKQSIPVIASWRLNERMYGELQGLNKQETADRYGKEQVHKWRRSYDIPPPNGESLEMCANRAVAYFKDQIVPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGNFIRRGSPAGPSEAGVYAYTRDIAFPMHCNY 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34675683 34678477 - Maker00034250 Lcy13g1581 651886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1581 365 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 116 343 IPR005952 GO:0006096(InterPro)|GO:0016868(InterPro)
Lcy13g1581 365 PANTHER PHOSPHOGLYCERATE MUTASE 113 356 IPR005952 GO:0006096(InterPro)|GO:0016868(InterPro)
Lcy13g1581 365 SUPERFAMILY Phosphoglycerate mutase-like 119 335 IPR029033 -
Lcy13g1581 365 Gene3D - 109 341 IPR029033 -
Lcy13g1581 365 CDD HP_PGM_like 119 338 IPR013078 -
Lcy13g1581 365 Pfam Histidine phosphatase superfamily (branch 1) 214 322 IPR013078 -
Lcy13g1581 365 Pfam Histidine phosphatase superfamily (branch 1) 119 195 IPR013078 -
Lcy13g1581 365 SMART PGAM_5 118 304 IPR013078 -
Lcy13g1581 365 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 121 130 IPR001345 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1581 K01834 - - csv:101211372 598.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0772 Lcy-Chr1:6581142 Lcy13g1581 Lcy-Chr13:34675683 5.85E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g380 . . . . . . . . Cmo05g00508 Cmo12g00114 . . . Car12g00134 Sed04g0128 . Cpe07g00121 Bhi04g00738 Tan02g2370 Cmetu03g2087 . Hepe10g0519 . Lcy13g1581 Cla08g01093 Cam08g1546 Cec08g1120 Cco08g1247 Clacu08g1248 . Cre08g1030 . . Cone17ag1233 Cone20ag0492 . . . Cme03g01506 Blo17g00214 . . Bda13g01520 . Bpe14g00345 . Bma02g00272 . . . Cma12g00144 Cma05g00486 Car05g00433 . Cpe11g00425 . . . . . . . . . . . . . . . Lsi08g00949 . Chy03g01016 .