Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1586 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGTAATGGTATCAAGACTAATGTGGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGGCCTGCCTCTTACACTACCAAGTATTTTGGATGTGAGCTTGGTGCACAATCCAAGTTCGATGAGAAAACTGGGACTTCTCTTGTAAATGGTGCACATGATACAGCAAAGCTGGCTGGTCTTCTCGAGAACTTCATCAAGAAATACGTTCAATGCTATGGATGTGGAAACCCTGAAACCGAGATAATCATCACGAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCCGATGTTGACATGAGAGATAAACTCACAACATTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCGAAGGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGGCTTAAGGAGGGAGAGGCTGCTGATGAGGAGCAGAAGAAGCTAAAAAAGGATTCCGTAAAGAAGAAAACCAGCAGTAGTACAAAGGATGCTGTTACCAAAGTGCCAAGCAAGAAGAAGAATAATGGCTCGGATGAGGATCATTCCCCAACTCGTAGCCAAGCTGGTGATAATGACCAAGCAGCTGACGATGACGACGATGATGATGTGCAGTGGCAAACAGATACATCTTTAGAGGCAGCTAAGCAGCGTATTCAGGAGCAGTTGAGTGCGGTCACTGCTGATATGGTCATGCTCTCCACTGCCGAAGAGAACAATAAGGTGTCAAAGAAGTCCCCCGAGCATGAAAAGTCTGCAGCCAATGGAAACAAGAATGGAAATGGAGTTTCTACTCATGGTGCCTATGTTCATGAGATCAAAGATCATTTGAAGAAAGGTTCCTCCGCAGCCCAGCTTAAATCATTTTTGGAATCACTTTCTGGAACTCCCCAAGAGATTGTGAACGCCCTAGTCGAAGCTCTATTCGATGGTATTGGGAAAGGCTTCTCAAAGGAGGTGGTGAAGAAGAAGAACTTCTTGGCTGCAGCTGCTGCTCAGGAGGGATCACAGATCATTCTTTTGCGCGCCATTGAATATTTCTGTCTCAATACAAGTCCGGATGCCGCTAAGGAGGTTGCTCTGGTTCTGAAGTCATTATACGACGGCGACGTGATAGAAGAGGAATTCGTATTAGAGTGGTACCAGCAGGGCGTGGCCGGTGCCAACAAAAGCTCCCAAATCTGGAAGCATGTAAAGCCCTTCATCGAATGGCTCCAGAATGCCGAGTCGGAGTCGGAAGAAGATTTAGCAGTGCTGAGCAAAGTCATTGTGTTCTTGTCTGGAATAAGGGTAATCGTTGGATCAGCTTTGTTTTGTTTGCGTGTGGCGCTCTGTGTCGTCTTCTCATTTCCTTGTTTTGTTGGTCTTTGGAATTCGCAGCTGTCTCTGAACAATGATATTTTTCATTCTTCGGTTTTGGAGAATCGGGACCTGGATTTCATTCTCGATCAAGTAAAAATTGGAACGATACAGAGATCTCTTTCTTTGGAGAATTTGATGCCTATTTTGAAATCTGGTGTTTTAGCTTAA 1623 44.61 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDSVKKKTSSSTKDAVTKVPSKKKNNGSDEDHSPTRSQAGDNDQAADDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTAEENNKVSKKSPEHEKSAANGNKNGNGVSTHGAYVHEIKDHLKKGSSAAQLKSFLESLSGTPQEIVNALVEALFDGIGKGFSKEVVKKKNFLAAAAAQEGSQIILLRAIEYFCLNTSPDAAKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKHVKPFIEWLQNAESESEEDLAVLSKVIVFLSGIRVIVGSALFCLRVALCVVFSFPCFVGLWNSQLSLNNDIFHSSVLENRDLDFILDQVKIGTIQRSLSLENLMPILKSGVLA 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 34737235 34740069 + Maker00033803 Lcy13g1586 651891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1586 540 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy13g1586 540 MobiDBLite consensus disorder prediction 143 235 - -
Lcy13g1586 540 Coils Coil 159 179 - -
Lcy13g1586 540 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Lcy13g1586 540 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy13g1586 540 Pfam eIF4-gamma/eIF5/eIF2-epsilon 368 446 IPR003307 GO:0005515(InterPro)
Lcy13g1586 540 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy13g1586 540 Gene3D - 105 145 - -
Lcy13g1586 540 Gene3D - 2 104 - -
Lcy13g1586 540 MobiDBLite consensus disorder prediction 148 218 - -
Lcy13g1586 540 MobiDBLite consensus disorder prediction 268 296 - -
Lcy13g1586 540 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy13g1586 540 CDD W2_eIF5 301 444 - -
Lcy13g1586 540 Gene3D - 292 448 - -
Lcy13g1586 540 FunFam Eukaryotic translation initiation factor 5 100 145 - -
Lcy13g1586 540 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 442 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
Lcy13g1586 540 ProSiteProfiles W2 domain profile. 294 446 IPR003307 GO:0005515(InterPro)
Lcy13g1586 540 SUPERFAMILY ARM repeat 300 440 IPR016024 -
Lcy13g1586 540 SMART 542_3 355 442 IPR003307 GO:0005515(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1586 K03262 - csv:101210873 746.503