Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1614 ATGCCACTAAGGACCCAGCAGCGTTATCTGTTGAGGGGAATCGTGGGTGCCACTGCTTTTTTTGGGTTAGAACAGCCACTGAGTTTAAAAGTCGTACTGAATTTCGTTTTTGTGCTATTTGAGATTCGAATGCTTGCTGTTCACTTTGATGGCTGGAGTAATGTTTGGAGTGGATCTGTATTTTCTTTAGTTGATCTTCTCTTACCTGTGTCATATGTCACTGCAGTTTTTGCAGAGGAAGACAGTCAATCCATTCTTATCGCATTTCTGATTTGGGACATAATAGAAAAACAAGAAAAGGCTTCCATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGTCTGATGATAGAGGCCAAGCACTTATTATGGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGGTTACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCTAGGAAAAGCCGATTGAGGAAAAAAGCATATGTTCAACAATTAGAGAGCAGTCGTTTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGAAATGGAGCCATGGCATTTGATGCAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAATTGAACGAATTGAGATCGGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTTGTTGATGGCATCTTGGTCCATTATGATGAGCTGTTCAGGCTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGATAACACCAGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTATCGAGCGGATCCCTCGGCTCCTCTGGTTCGTCAGGGAACGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACGCTCGAGGGTTTTATACGCCAAGCTGACAATCTACGACAACAGACGCTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCATACATGATTACTTCTCCCGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCCAGAGAGTAA 1311 45.92 MPLRTQQRYLLRGIVGATAFFGLEQPLSLKVVLNFVFVLFEIRMLAVHFDGWSNVWSGSVFSLVDLLLPVSYVTAVFAEEDSQSILIAFLIWDIIEKQEKASMATEGSPRTDISTDGDTDEKSRRSDDRGQALIMASDSSDRSKDKTDQKVTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDAEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWITPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35099510 35106512 + Maker00034104 Lcy13g1614 651919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1614 436 Gene3D - 152 202 - -
Lcy13g1614 436 Pfam bZIP transcription factor 153 191 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1614 436 Coils Coil 170 197 - -
Lcy13g1614 436 Coils Coil 227 247 - -
Lcy13g1614 436 PANTHER TRANSCRIPTION FACTOR TGA9 114 436 - -
Lcy13g1614 436 SUPERFAMILY Leucine zipper domain 153 194 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1614 436 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 154 169 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1614 436 FunFam BZIP family transcription factor 149 199 - -
Lcy13g1614 436 MobiDBLite consensus disorder prediction 102 168 - -
Lcy13g1614 436 Pfam Seed dormancy control 233 308 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy13g1614 436 SMART brlzneu 146 210 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1614 436 MobiDBLite consensus disorder prediction 113 131 - -
Lcy13g1614 436 MobiDBLite consensus disorder prediction 139 163 - -
Lcy13g1614 436 ProSiteProfiles DOG1 domain profile. 216 433 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy13g1614 436 CDD bZIP_HBP1b-like 152 203 - -
Lcy13g1614 436 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 193 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1614 Lcy-Chr13:35099510 Lcy7g0710 Lcy-Chr7:6731665 3.16E-170 dispersed
Lcy13g1614 Lcy-Chr13:35099510 Lcy5g0911 Lcy-Chr5:15586818 9.77E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19405 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1614 K14431 - csv:101213210 580.867