Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1620 ATGTCCTCCGCCGATCCTCCTTCCGCCGCCTCCCCCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACCCGCCCCCGCCCTAGACCCTCCGCCTCTCAGCTCCCTCTCCCGCCTTCCGCCGCCGACAATGTGGTGGTTCTCATGGTAGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTTCCCGCCCCCAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCAACGATTCTCTCCGCTGCATTCCCGATTGCCGCCACTGCTTCCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCCACTTGCCCGCTGTGTCGAAATTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA 504 62.1 MSSADPPSAASPAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35162605 35163108 - Maker00034186 Lcy13g1620 651925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1620 167 PANTHER RING-H2 FINGER PROTEIN ATL67 11 166 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Lcy13g1620 167 Pfam Ring finger domain 102 144 IPR001841 -
Lcy13g1620 167 SMART ring_2 102 143 IPR001841 -
Lcy13g1620 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 149 IPR013083 -
Lcy13g1620 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lcy13g1620 167 SUPERFAMILY RING/U-box 101 148 - -
Lcy13g1620 167 CDD RING-H2_EL5-like 102 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1620 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1620 Lcy-Chr13:35162605 Lcy6g0801 Lcy-Chr6:7986559 3.73E-33 dispersed
Lcy13g1620 Lcy-Chr13:35162605 Lcy11g2045 Lcy-Chr11:44092917 3.92E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy3g1199 . 77 589 C3H Transcription Factor Family AT2G31510 73.3 5.0e-225 777.7
Lcy4g1368 . 112 286 C3H Transcription Factor Family AT2G31510 75.6 2.8e-66 250.4
Lcy4g1367 . 701 807 C3H Transcription Factor Family AT2G31510 77.9 2.1e-50 197.6
Lcy4g1363 . 774 866 C3H Transcription Factor Family AT2G31510 77.4 8.7e-44 175.6
Lcy3g1199 . 60 547 C3H Transcription Factor Family AT2G31770 56.7 8.4e-165 577.8
Lcy4g1368 . 113 260 C3H Transcription Factor Family AT2G31770 61.7 1.6e-43 174.9
Lcy3g1199 . 60 554 C3H Transcription Factor Family AT2G31760 55.1 1.7e-162 570.1
Lcy4g1368 . 113 245 C3H Transcription Factor Family AT2G31760 64.2 1.2e-43 175.3
Lcy1g1205 . 8 167 C3H Transcription Factor Family AT5G06490 52.5 7.0e-45 177.9
Lcy1g1205 . 8 167 C3H Transcription Factor Family AT5G06490 52.5 7.0e-45 177.9
Lcy10g2079 . 1 222 C3H Transcription Factor Family AT3G02290 61.3 1.6e-72 270.0
Lcy2g0769 . 1 335 C3H Transcription Factor Family AT1G11020 70.5 2.5e-132 469.2
Lcy13g0045 . 59 218 C3H Transcription Factor Family AT1G50440 75.6 1.2e-67 253.8
Lcy1g2340 . 8 305 C3H Transcription Factor Family AT5G08750 57.9 2.3e-89 326.6
Lcy6g0352 . 1 536 C3H Transcription Factor Family AT3G16090 62.8 1.4e-171 600.1
Lcy10g2079 . 1 220 C3H Transcription Factor Family AT5G38895 56.1 5.3e-69 258.8
Lcy13g2012 . 134 345 C3H Transcription Factor Family AT1G19310 66.4 1.0e-79 293.9
Lcy1g1061 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 6.1e-69 258.1
Lcy1g0754 . 9 257 C3H Transcription Factor Family AT2G22120 50.9 1.4e-78 290.8
Lcy13g1620 . 58 168 C3H Transcription Factor Family AT5G07040 64.9 6.1e-39 157.9
Lcy2g0454 . 1 337 C3H Transcription Factor Family AT1G18470 75.6 1.6e-150 530.0
Lcy10g0895 . 11 405 C3H Transcription Factor Family AT1G18470 58.3 2.4e-127 453.0
Lcy10g1463 . 74 300 C3H Transcription Factor Family AT1G68200 51.7 6.0e-51 198.7
Lcy3g1199 . 60 547 C3H Transcription Factor Family AT2G31770 56.7 8.4e-165 577.8
Lcy4g1368 . 113 260 C3H Transcription Factor Family AT2G31770 61.7 1.6e-43 174.9
Lcy3g1199 . 60 554 C3H Transcription Factor Family AT2G31760 55.1 1.7e-162 570.1
Lcy4g1368 . 113 245 C3H Transcription Factor Family AT2G31760 64.2 1.2e-43 175.3
Lcy9g1080 . 119 349 C3H Transcription Factor Family AT5G55970 69.4 1.6e-94 343.6
Lcy1g2340 . 8 321 C3H Transcription Factor Family AT5G63780 51.9 4.9e-84 308.9
Lcy5g0587 . 1 426 C3H Transcription Factor Family AT3G58030 54.8 1.9e-111 400.2
Lcy9g1080 . 108 413 C3H Transcription Factor Family AT4G26580 63.4 6.2e-110 394.8
Lcy1g1641 . 28 584 C3H Transcription Factor Family AT5G01960 59.1 4.4e-161 565.1
Lcy7g1098 . 1 559 C3H Transcription Factor Family AT5G01960 50.6 3.6e-139 492.3
Lcy8g1343 . 63 217 C3H Transcription Factor Family AT2G04240 57.1 4.9e-44 174.9
Lcy6g0752 . 136 574 C3H Transcription Factor Family AT5G45290 51.5 1.1e-95 348.2
Lcy2g0339 . 76 368 C3H Transcription Factor Family AT5G05810 51.9 1.5e-73 274.2
Lcy10g2219 . 12 218 C3H Transcription Factor Family AT5G05830 55.2 5.8e-58 221.5
Lcy5g0151 . 70 231 C3H Transcription Factor Family AT5G05830 63.6 4.9e-57 218.4
Lcy1g1521 . 31 170 C3H Transcription Factor Family AT5G05830 62.9 9.5e-45 177.6
Lcy2g0847 . 455 842 C3H Transcription Factor Family AT4G28890 50.9 1.0e-96 351.3
Lcy10g2079 . 1 222 C3H Transcription Factor Family AT5G15790 59.6 3.6e-72 268.9
Lcy10g2248 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 1.5e-114 409.8
Lcy3g1640 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 5.7e-117 417.9
Lcy11g1838 . 10 394 C3H Transcription Factor Family AT2G44580 53.4 2.5e-118 422.9
Lcy13g2012 . 143 268 C3H Transcription Factor Family AT1G74990 59.8 1.3e-40 163.3
Lcy9g1923 . 3 315 C3H Transcription Factor Family AT5G20910 63.3 7.5e-110 394.4
Lcy6g0352 . 119 536 C3H Transcription Factor Family AT1G65040 55.0 1.1e-111 400.6
Lcy1g1061 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 1.1e-73 273.9
Lcy13g2012 . 124 347 C3H Transcription Factor Family AT2G23780 56.5 1.4e-68 256.9
Lcy5g0913 . 1 314 C3H Transcription Factor Family AT3G10810 52.7 6.6e-76 282.3
Lcy1g1764 . 145 383 C3H Transcription Factor Family AT3G10810 61.1 6.4e-71 265.8
Lcy12g1628 . 1 168 C3H Transcription Factor Family AT1G63840 59.1 1.8e-46 183.0
Lcy13g0728 . 1 154 C3H Transcription Factor Family AT1G63840 51.9 1.4e-41 166.8
Lcy9g2343 . 4 181 C3H Transcription Factor Family AT1G76410 56.6 1.2e-51 200.3
Lcy6g2365 . 32 171 C3H Transcription Factor Family AT1G76410 60.7 3.6e-43 172.2
Lcy13g1313 . 1 410 C3H Transcription Factor Family AT1G80400 53.3 4.7e-112 402.1
Lcy6g2365 . 27 162 C3H Transcription Factor Family AT2G17450 60.0 3.2e-39 159.1
Lcy3g1199 . 77 589 C3H Transcription Factor Family AT2G31510 73.3 5.0e-225 777.7
Lcy4g1368 . 112 286 C3H Transcription Factor Family AT2G31510 75.6 2.8e-66 250.4
Lcy4g1367 . 701 807 C3H Transcription Factor Family AT2G31510 77.9 2.1e-50 197.6
Lcy4g1363 . 774 866 C3H Transcription Factor Family AT2G31510 77.4 8.7e-44 175.6
Lcy1g1205 . 7 166 C3H Transcription Factor Family AT2G35910 61.7 2.3e-52 203.0
Lcy5g0504 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 1.7e-44 176.8
Lcy5g0512 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 1.7e-44 176.8
Lcy1g2128 . 1 308 C3H Transcription Factor Family AT2G41980 81.8 1.2e-152 536.6
Lcy8g2151 . 162 458 C3H Transcription Factor Family AT2G41980 72.9 3.2e-129 458.8
Lcy6g0069 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 9.3e-129 457.2
Lcy6g0068 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.1e-128 456.1
Lcy10g1027 . 48 321 C3H Transcription Factor Family AT2G41980 75.2 3.4e-123 438.7
Lcy7g0691 . 118 471 C3H Transcription Factor Family AT2G41980 59.2 2.6e-115 412.5
Lcy4g0830 . 203 437 C3H Transcription Factor Family AT2G41980 75.7 1.5e-110 396.7
Lcy11g1506 . 121 358 C3H Transcription Factor Family AT3G06140 58.0 1.0e-73 274.6
Lcy5g0283 . 33 329 C3H Transcription Factor Family AT3G09770 58.9 1.7e-86 317.0
Lcy10g0046 . 136 680 C3H Transcription Factor Family AT3G26730 55.7 1.3e-165 580.9
Lcy5g2227 . 59 344 C3H Transcription Factor Family AT3G47990 71.1 5.0e-119 424.9
Lcy2g0651 . 110 396 C3H Transcription Factor Family AT3G47990 65.4 1.7e-114 409.8
Lcy9g2343 . 4 187 C3H Transcription Factor Family AT1G20823 56.5 1.2e-52 203.8
Lcy6g2365 . 30 171 C3H Transcription Factor Family AT1G20823 63.2 3.7e-46 182.2
Lcy8g1080 . 35 223 C3H Transcription Factor Family AT3G18930 57.6 3.0e-45 180.3
Lcy6g2328 . 20 236 C3H Transcription Factor Family AT5G66070 73.7 7.3e-75 277.7
Lcy5g0151 . 9 231 C3H Transcription Factor Family AT2G37950 50.9 1.2e-47 187.2
Lcy5g0241 . 1 262 C3H Transcription Factor Family AT5G02750 54.7 2.6e-69 259.6
Lcy2g0454 . 5 337 C3H Transcription Factor Family AT1G73950 67.3 2.6e-124 443.0
Lcy10g0895 . 12 409 C3H Transcription Factor Family AT1G73950 53.2 4.8e-110 395.6