Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1620 ATGTCCTCCGCCGATCCTCCTTCCGCCGCCTCCCCCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACCCGCCCCCGCCCTAGACCCTCCGCCTCTCAGCTCCCTCTCCCGCCTTCCGCCGCCGACAATGTGGTGGTTCTCATGGTAGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTTCCCGCCCCCAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCAACGATTCTCTCCGCTGCATTCCCGATTGCCGCCACTGCTTCCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCCACTTGCCCGCTGTGTCGAAATTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA 504 62.1 MSSADPPSAASPAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPRPRPSASQLPLPPSAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPNDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35162605 35163108 - Maker00034186 Lcy13g1620 651925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1620 167 PANTHER RING-H2 FINGER PROTEIN ATL67 11 166 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Lcy13g1620 167 Pfam Ring finger domain 102 144 IPR001841 -
Lcy13g1620 167 SMART ring_2 102 143 IPR001841 -
Lcy13g1620 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 149 IPR013083 -
Lcy13g1620 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lcy13g1620 167 SUPERFAMILY RING/U-box 101 148 - -
Lcy13g1620 167 CDD RING-H2_EL5-like 102 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1620 Lcy-Chr13:35162605 Lcy6g0801 Lcy-Chr6:7986559 3.73E-33 dispersed
Lcy13g1620 Lcy-Chr13:35162605 Lcy11g2045 Lcy-Chr11:44092917 3.92E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1620 - - - 0.0