Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g1642 | ATGTCATCACCAAACTTCAACTCTCTTCTTCTCCATTTCCCTTCTTCCATTTCCCAAAGCTTCGAAGCCCTTTTCTTAGCCCTTCTCCTTCTCTCCATTTTCGCCTTCTTCCTCCACCCAGGCGGCCTGGCTTGGGCCCTTTCCAAGTCCAGAACCGCCGCCTCCGCCATCCCGGGCCCCGCCGGGCTCCCATTCATCGGCCTCCTCCACGTCTTCACTCTCTCCGCCCCTCACAGAGCCCTGGCCGCCCTCTCCAAGAAATTCAAAGCCCACCCTCTGATGGCCTTCTCCGTTGGGCTCACTAGGTTCGTGATTTCCAGCAACCCTGATTTCGCGAAGGAGATTCTGAGCAGCGCTTCCTTCGCCGACAGGCCCGTGAAGGAATCTGCTTACGAACTGCTTTTTCACAGAGCAATGGGGTTTGCTCCTTACGGTGAGTACTGGAGGAATTTGAGAAGGATTTCAGCTACTTACATGTTTAGTCCTAAGAGAATAGCTGCTTTTGAAGGGTTTAGAAGGGATGTGGGAGTGAAAATGATTGGGGAGATTGAGAAATCCATGGGTTTCAAAGGGGAAGTTAGAGTTAAGGAGATTCTTCATTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGAAAGTGTTATGAGTTTGGTGGAATGGGGAATAATAATGGTGAGGATGAAGGGGTTGAGCTTGAGGAGTTGGTCAGTGAAGGGTATGAGTTGCTTGGGATTTTCAATTGGAGTGACCATTTTCCCTTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGGAAAAGGTGTAGATGTTTGGCTTCTAAGGTCAATGTTTTTGTGGGAAAAATCATTGAGGAACATAGAATGAAGAGGAAGATCAAGGGACACCAACAACAACTTGACCAAGAACACAATAGAGACTTTGTTGATGTCTTACTTGACTTGGAAGAACATGACAAACTCTCAGATTCTGACATGATTGCTGTTCTCTGGGAGATGATTTTCCGAGGAACAGACACAGTGGCCATACTTCTGGAGTGGATTTTAGCCCGAATGGTTCTCCACCCAGAAATCCAAACCAGAGCCCAAGACGAAATCGATTCAGTAATCGGAAAAAAGTTCAGACCCATTACAGATTCCGACATCCAGAATCTCCCCTTTCTTCAGTCGATCGTGAAGGAGTGCTTGAGAATGCATCCGCCAGGGCCGCTGCTGTCGTGGGCGAGGCTGGCGGTGGCGGACGTGCACGTCGGGGGGAGGCTGATTCCGGCGGGGACGACGGCGATGGTGAACATGTGGGCAATAACGCACGACGAGAGGGTTTGGGCAGAGGCTGAGAAGTTCGAGCCGAATCGATTCATGGAAGAGGAAGTGAGTGTGATGGGAAGCGATTTGAGATTGGCTCCGTTCGGGGCAGGGAGAAGAGTCTGCCCGGGAAAGGCAATGGGATTGGCCAGTGTTCATCTCTGGTTGGCTCAGCTGCTTCAAGCTTTCAAATGGGTTCCTTTTGAAGAGGGCAGCAATGGAGTTGATTTATCAGAGTGCCTTAAACTCTCCCTGGAAATGGAAACTCCATTGGTGTGCAGAGCTGTGGCTAGGGTTGGTTGA | 1605 | 49.66 | MSSPNFNSLLLHFPSSISQSFEALFLALLLLSIFAFFLHPGGLAWALSKSRTAASAIPGPAGLPFIGLLHVFTLSAPHRALAALSKKFKAHPLMAFSVGLTRFVISSNPDFAKEILSSASFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATYMFSPKRIAAFEGFRRDVGVKMIGEIEKSMGFKGEVRVKEILHFGSLNNVMMTVFGKCYEFGGMGNNNGEDEGVELEELVSEGYELLGIFNWSDHFPFLGWLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKRKIKGHQQQLDQEHNRDFVDVLLDLEEHDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQTRAQDEIDSVIGKKFRPITDSDIQNLPFLQSIVKECLRMHPPGPLLSWARLAVADVHVGGRLIPAGTTAMVNMWAITHDERVWAEAEKFEPNRFMEEEVSVMGSDLRLAPFGAGRRVCPGKAMGLASVHLWLAQLLQAFKWVPFEEGSNGVDLSECLKLSLEMETPLVCRAVARVG | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 35382841 | 35385026 | + | Maker00034083 | Lcy13g1642 | 651947 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g1642 | 534 | FunFam | Cytochrome P450 78A5 | 49 | 532 | - | - | |
| Lcy13g1642 | 534 | PANTHER | CYTOCHROME P450 78A7-RELATED | 24 | 529 | IPR051996 | - | |
| Lcy13g1642 | 534 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 469 | 478 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy13g1642 | 534 | SUPERFAMILY | Cytochrome P450 | 57 | 532 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | E-class P450 group I signature | 430 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | E-class P450 group I signature | 324 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | E-class P450 group I signature | 476 | 499 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | E-class P450 group I signature | 388 | 406 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | E-class P450 group I signature | 344 | 370 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | E-class P450 group I signature | 466 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | Pfam | Cytochrome P450 | 58 | 504 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | CDD | CYP78 | 89 | 525 | - | - | |
| Lcy13g1642 | 534 | Gene3D | Cytochrome P450 | 44 | 528 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | P450 superfamily signature | 335 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | P450 superfamily signature | 467 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | P450 superfamily signature | 476 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g1642 | 534 | PRINTS | P450 superfamily signature | 389 | 400 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1642 | Lcy-Chr13:35382841 | Lcy5g2475 | Lcy-Chr5:47499117 | 2.83E-240 | dispersed | |
| Lcy7g0047 | Lcy-Chr7:363829 | Lcy13g1642 | Lcy-Chr13:35382841 | 6.24E-190 | transposed | |
| Lcy12g1766 | Lcy-Chr12:38475058 | Lcy13g1642 | Lcy-Chr13:35382841 | 4.34E-57 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g1642 | K20619 | - | csv:101221468 | 850.892 |