Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1645 ATGCCGAGCCTTTCGACTCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTGTCGATGGCAAGGTATACGATGTGACATCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATCGTCGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGCTGATGGAGAAGTTCTACATCGGCGTGCTTGATGAATCTTCCTCAGCAAGCCCAGAACTCGAAACGAAGCGACCAGACGGTTATGCAGCTCAGGTTCAGGCCTTGACAAAGCAATACTGGGCGGCTCCTGTTGCAATACTTGGTATTTCTGTAGCACTTGGCTGGTTATACTTGCGCAAAAAGTGA 396 48.23 MPSLSTLYSIQEVSQHSSNDDCWIIVDGKVYDVTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGVLDESSSASPELETKRPDGYAAQVQALTKQYWAAPVAILGISVALGWLYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35406354 35408462 - Maker00034107 Lcy13g1645 651950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1645 131 PANTHER CYTOCHROME B5 5 127 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy13g1645 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lcy13g1645 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 84 IPR036400 -
Lcy13g1645 131 Gene3D - 3 86 IPR036400 -
Lcy13g1645 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lcy13g1645 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Lcy13g1645 131 SMART Cyt_b5_2 8 81 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lcy13g1645 131 FunFam Cytochrome b5 type B 3 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1356 Lcy-Chr12:30276841 Lcy13g1645 Lcy-Chr13:35406354 1.14E-20 dispersed
Lcy13g0791 Lcy-Chr13:12524618 Lcy13g1645 Lcy-Chr13:35406354 1.59E-09 dispersed
Lcy13g1645 Lcy-Chr13:35406354 Lcy3g0069 Lcy-Chr3:1833861 7.57E-22 dispersed
Lcy13g1645 Lcy-Chr13:35406354 Lcy11g1769 Lcy-Chr11:41500761 2.10E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1645 K23490 - csv:101220127 231.491