Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1645 ATGCCGAGCCTTTCGACTCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTGTCGATGGCAAGGTATACGATGTGACATCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATCGTCGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGCTGATGGAGAAGTTCTACATCGGCGTGCTTGATGAATCTTCCTCAGCAAGCCCAGAACTCGAAACGAAGCGACCAGACGGTTATGCAGCTCAGGTTCAGGCCTTGACAAAGCAATACTGGGCGGCTCCTGTTGCAATACTTGGTATTTCTGTAGCACTTGGCTGGTTATACTTGCGCAAAAAGTGA 396 48.23 MPSLSTLYSIQEVSQHSSNDDCWIIVDGKVYDVTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGVLDESSSASPELETKRPDGYAAQVQALTKQYWAAPVAILGISVALGWLYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35406354 35408462 - Maker00034107 Lcy13g1645 651950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1645 131 PANTHER CYTOCHROME B5 5 127 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy13g1645 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lcy13g1645 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 84 IPR036400 -
Lcy13g1645 131 Gene3D - 3 86 IPR036400 -
Lcy13g1645 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lcy13g1645 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Lcy13g1645 131 SMART Cyt_b5_2 8 81 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lcy13g1645 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lcy13g1645 131 FunFam Cytochrome b5 type B 3 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1645 K23490 - - csv:101220127 231.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1356 Lcy-Chr12:30276841 Lcy13g1645 Lcy-Chr13:35406354 1.14E-20 dispersed
Lcy13g0791 Lcy-Chr13:12524618 Lcy13g1645 Lcy-Chr13:35406354 1.59E-09 dispersed
Lcy13g1645 Lcy-Chr13:35406354 Lcy3g0069 Lcy-Chr3:1833861 7.57E-22 dispersed
Lcy13g1645 Lcy-Chr13:35406354 Lcy11g1769 Lcy-Chr11:41500761 2.10E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24