Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1649 ATGACCGTGCTAGGGGTAAAGAAGAGAGGCCATGGAAACCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCCGAGGTTTTGGAACTTGAGAAGGCTACAATAATGAAGCATTGTTCTTTACCTTCAAGAGATATGCGACTTTTAGATCCCCTCTTCCTTTGTCCATCTACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTCGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTCTAATGAACTCCTTAGATGGATGTGCTTCACAGTACAAGTCAGAACTATGCAAGCGTCTCCGTGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTGACTTGCTCATTTCTTGACACTCAGTTTGTTGAGGTATTAAGTAGTCACATTCAGAACCTTATACCTAGAGATTCTTGGATTCAACAGGTGAAGGGGATGGAAATGGAGATATACCCTCTGCTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCATGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACAGAGAAGAAACAAAGGTTGGAAGCTAACATCCGAAGTAACTTGTACCTCGAAACTAGTTTCTTTGGGAAACAGCTACCGAAATCAGCTCCTGTTTCGCCAGTGGGTTCTACCAATGGATCTTATAAATTACAAAGGGCCTTTAGCAGCATTGTGAACTCAAGCAGCTTGATGAGTTCATCGAACAACGGTGATAATGTCGAACAATTGGAGATGCTGCTCGAGGCATACTTCGTGGTCATTGACGACATGCTCAGTAAATTATTATCACTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAATGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCAGCTACATTCTTGGCTACGATGTTTGCGGCTTTAACCGCAGTTTTTGGCATGAATTTTCTTGACGACGTCTTCAACCATTCGACTTCTTTCCAGTGGATAGTTTACTTTACCTTGATTGCCTGTGGCCTTGTATATCTCTCTTTTCTATTCTATTTTAGGTACAAGAAAATCTTCCCATTGTAA 1203 40.98 MTVLGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMKHCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCASQYKSELCKRLRANKDQSDDLPFEFRALELALELTCSFLDTQFVEVLSSHIQNLIPRDSWIQQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVHDEIEHLMDDDGDMAEMYLTEKKQRLEANIRSNLYLETSFFGKQLPKSAPVSPVGSTNGSYKLQRAFSSIVNSSSLMSSSNNGDNVEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFLDDVFNHSTSFQWIVYFTLIACGLVYLSFLFYFRYKKIFPL 400
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 35439573 35443389 + Maker00034191 Lcy13g1649 651954
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1649 400 CDD Mrs2_Mfm1p-like 16 397 IPR039204 -
Lcy13g1649 400 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 154 397 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy13g1649 400 FunFam Magnesium transporter MRS2-1 4 87 - -
Lcy13g1649 400 Gene3D - 3 87 - -
Lcy13g1649 400 Gene3D Magnesium transport protein CorA, transmembrane region 90 331 - -
Lcy13g1649 400 Pfam Magnesium transporter MRS2-like 19 226 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0512 Lcy-Chr12:6182932 Lcy13g1649 Lcy-Chr13:35439573 4.76E-126 dispersed
Lcy13g0329 Lcy-Chr13:3603206 Lcy13g1649 Lcy-Chr13:35439573 4.30E-62 dispersed
Lcy13g1649 Lcy-Chr13:35439573 Lcy4g0156 Lcy-Chr4:1999049 3.10E-65 dispersed
Lcy13g1649 Lcy-Chr13:35439573 Lcy12g2154 Lcy-Chr12:42818631 1.36E-65 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1649 K16075 - csv:101220835 628.632