Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1649 ATGACCGTGCTAGGGGTAAAGAAGAGAGGCCATGGAAACCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCCGAGGTTTTGGAACTTGAGAAGGCTACAATAATGAAGCATTGTTCTTTACCTTCAAGAGATATGCGACTTTTAGATCCCCTCTTCCTTTGTCCATCTACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTCGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTCTAATGAACTCCTTAGATGGATGTGCTTCACAGTACAAGTCAGAACTATGCAAGCGTCTCCGTGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTGACTTGCTCATTTCTTGACACTCAGTTTGTTGAGGTATTAAGTAGTCACATTCAGAACCTTATACCTAGAGATTCTTGGATTCAACAGGTGAAGGGGATGGAAATGGAGATATACCCTCTGCTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCATGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACAGAGAAGAAACAAAGGTTGGAAGCTAACATCCGAAGTAACTTGTACCTCGAAACTAGTTTCTTTGGGAAACAGCTACCGAAATCAGCTCCTGTTTCGCCAGTGGGTTCTACCAATGGATCTTATAAATTACAAAGGGCCTTTAGCAGCATTGTGAACTCAAGCAGCTTGATGAGTTCATCGAACAACGGTGATAATGTCGAACAATTGGAGATGCTGCTCGAGGCATACTTCGTGGTCATTGACGACATGCTCAGTAAATTATTATCACTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAATGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCAGCTACATTCTTGGCTACGATGTTTGCGGCTTTAACCGCAGTTTTTGGCATGAATTTTCTTGACGACGTCTTCAACCATTCGACTTCTTTCCAGTGGATAGTTTACTTTACCTTGATTGCCTGTGGCCTTGTATATCTCTCTTTTCTATTCTATTTTAGGTACAAGAAAATCTTCCCATTGTAA 1203 40.98 MTVLGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMKHCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCASQYKSELCKRLRANKDQSDDLPFEFRALELALELTCSFLDTQFVEVLSSHIQNLIPRDSWIQQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVHDEIEHLMDDDGDMAEMYLTEKKQRLEANIRSNLYLETSFFGKQLPKSAPVSPVGSTNGSYKLQRAFSSIVNSSSLMSSSNNGDNVEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFLDDVFNHSTSFQWIVYFTLIACGLVYLSFLFYFRYKKIFPL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35439573 35443389 + Maker00034191 Lcy13g1649 651954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1649 400 CDD Mrs2_Mfm1p-like 16 397 IPR039204 -
Lcy13g1649 400 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 154 397 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy13g1649 400 FunFam Magnesium transporter MRS2-1 4 87 - -
Lcy13g1649 400 Gene3D - 3 87 - -
Lcy13g1649 400 Gene3D Magnesium transport protein CorA, transmembrane region 90 331 - -
Lcy13g1649 400 Pfam Magnesium transporter MRS2-like 19 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1649 K16075 - - csv:101220835 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0512 Lcy-Chr12:6182932 Lcy13g1649 Lcy-Chr13:35439573 4.76E-126 dispersed
Lcy13g0329 Lcy-Chr13:3603206 Lcy13g1649 Lcy-Chr13:35439573 4.30E-62 dispersed
Lcy13g1649 Lcy-Chr13:35439573 Lcy4g0156 Lcy-Chr4:1999049 3.10E-65 dispersed
Lcy13g1649 Lcy-Chr13:35439573 Lcy12g2154 Lcy-Chr12:42818631 1.36E-65 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G16010 85.3 1.5e-207 719.5
Lcy13g1649 . 3 401 MRS2 Gene Family AT1G16010 50.6 4.2e-106 382.5
Lcy13g0329 . 1 400 MRS2 Gene Family AT5G64560 71.6 9.4e-147 517.3
Lcy12g2154 . 1 354 MRS2 Gene Family AT5G64560 65.3 1.1e-118 424.1
Lcy4g0156 . 14 497 MRS2 Gene Family AT3G19640 63.0 1.9e-152 536.6
Lcy6g0580 . 59 560 MRS2 Gene Family AT3G58970 54.3 6.6e-128 454.9
Lcy13g1649 . 5 401 MRS2 Gene Family AT2G03620 64.9 4.3e-132 468.8
Lcy12g0512 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.4e-113 406.0
Lcy13g0329 . 1 362 MRS2 Gene Family AT5G09690 65.1 1.6e-115 413.3
Lcy12g2154 . 1 316 MRS2 Gene Family AT5G09690 61.1 1.2e-97 354.0
Lcy12g0512 . 40 383 MRS2 Gene Family AT5G09690 50.6 9.3e-79 291.2
Lcy13g0329 . 23 315 MRS2 Gene Family AT5G09720 57.8 1.2e-77 287.3
Lcy12g2154 . 33 291 MRS2 Gene Family AT5G09720 60.2 9.7e-75 277.7
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G80900 83.0 1.7e-200 696.0
Lcy13g1649 . 1 401 MRS2 Gene Family AT1G80900 51.4 8.8e-104 374.8
Lcy5g1032 . 16 466 MRS2 Gene Family AT5G22830 67.1 3.0e-155 545.8