Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1675 ATGGACGACGGAGGAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGGCTGTTCCGCCGCCGCAGCACGACCCGGCGGCGCACCCTCAGCACCAGCCGCCGCCGATGGGGATGGAAAATATCCCGGCGACTTTGAGCCATGGAGGGAGATTCATTCAGTACAACATCTTTGGTAACATCTTTGAAGTTACGGCTAAGTACAAGCCTCCCATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCCGAGACGAACGAGCACGTGGCGATCAAGAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACTCTTCGTGAGATTAAGCTGCTTCGACACATGGATCATGAAAACGTCAGGAAATTTGAGTCTGTTGTTGCAATTAGGGATATCATACCTCCACCTTTAAGGGAAACATTTAATGATGTTTATATAGCATACGAGCTAATGGATACTGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCAGAGGAGCATTGTCAGGTTACATTCTGTAAACGTACTTGTTGGGATGTTGATGATATTGATCTTGAAGCAATTGATCTAAGCGCAGGGATGGCAGAGAGCACTATTCTTCGTGGGTTGAAGTACATACATTCAGCAAATGTTCTGCATAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGTGATTTTGGACTTGCTCGTGTTACTTCTGAAACTGACTTCATGACAGAATATGTGGTTACAAGATGGTACCGTGCTCCAGAGCTCTTGCTTAACTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGAGATCATGTTCATCAATTACGCTTGCTTTTGGAGCTGATTGGCACTCCATCAGAGGCTGATCTTGGTTTTTTGAACGAGAACGCTAAAAGATACATACGGCAACTTCCTCATTACCATCGGCAGTCATTCACTGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGGCAGAGAATTACCGTTGAAGATGCTCTAGCTCATCCTTATCTGACTTCATTACATGACATTAGTGATGAGCCTGTCTGCATGATGCCCTTCAGCTTCGATTTCGAGCAGCATGCGCTTACCGAGGAACAAATGAAAGAGCTGATCTATCGAGAGGCACTCGCATTTAACCCCGAGTATCATCAGCAATAA 1302 45.55 MDDGGASQPDDTVMSEAAAVPPPQHDPAAHPQHQPPPMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVRKFESVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQVTFCKRTCWDVDDIDLEAIDLSAGMAESTILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMMPFSFDFEQHALTEEQMKELIYREALAFNPEYHQQ 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35711936 35721110 - Maker00033827 Lcy13g1675 651980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1675 433 SMART serkin_6 70 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1675 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1675 433 FunFam Mitogen-activated protein kinase 55 170 - -
Lcy13g1675 433 MobiDBLite consensus disorder prediction 24 38 - -
Lcy13g1675 433 ProSitePatterns Protein kinases ATP-binding region signature. 76 100 IPR017441 GO:0005524(InterPro)
Lcy13g1675 433 Gene3D Transferase(Phosphotransferase) domain 1 210 412 - -
Lcy13g1675 433 SUPERFAMILY Protein kinase-like (PK-like) 75 393 IPR011009 -
Lcy13g1675 433 ProSiteProfiles Protein kinase domain profile. 70 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1675 433 Gene3D Phosphorylase Kinase; domain 1 46 180 - -
Lcy13g1675 433 Gene3D Phosphorylase Kinase; domain 1 413 422 - -
Lcy13g1675 433 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 63 423 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy13g1675 433 FunFam Mitogen-activated protein kinase 206 412 - -
Lcy13g1675 433 CDD STKc_TEY_MAPK 63 428 - -
Lcy13g1675 433 MobiDBLite consensus disorder prediction 1 42 - -
Lcy13g1675 433 Pfam Protein kinase domain 75 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1620 Lcy-Chr12:36495400 Lcy13g1675 Lcy-Chr13:35711936 6.35E-192 dispersed
Lcy13g0741 Lcy-Chr13:11249957 Lcy13g1675 Lcy-Chr13:35711936 2.97E-189 dispersed
Lcy13g1675 Lcy-Chr13:35711936 Lcy6g0925 Lcy-Chr6:9406572 6.73E-130 dispersed
Lcy13g1675 Lcy-Chr13:35711936 Lcy11g0257 Lcy-Chr11:3699002 9.40E-205 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65581 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1675 K14512 - csv:101204301 745.732