Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1687 ATGAGCCAAACAGTACTTCAGGGTTTTTCGTCATATAAAAATTTCGAGCATCATCTTCCCGCCATTGCAAATCACCAGATTTTCATCGATCCGATCATATCATCTGTGCTAAACCAAAAGCCATTTTCAGCCGTCGAATTCTTGCAGTTCGTACAGATTCCGGACATGGCCGAAGAGGAATCCGGAGAGGTTATCCGGCCGCAATTTCCGACAGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAATTCAGAAGCCCTGTTTCTCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTTGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATTCGAGTCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAATCGCCCTCGCACTGTCGTTGATAAAGCGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG 588 49.66 MSQTVLQGFSSYKNFEHHLPAIANHQIFIDPIISSVLNQKPFSAVEFLQFVQIPDMAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRPRTVVDKAPPEGTRRIDDFFRRSAKTTSAETNES 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35828038 35828625 + Maker00033820 Lcy13g1687 651992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1687 195 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 167 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy13g1687 195 Gene3D Histone, subunit A 38 146 IPR009072 GO:0046982(InterPro)
Lcy13g1687 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 131 IPR003958 -
Lcy13g1687 195 MobiDBLite consensus disorder prediction 156 185 - -
Lcy13g1687 195 MobiDBLite consensus disorder prediction 142 195 - -
Lcy13g1687 195 SUPERFAMILY Histone-fold 65 149 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1687 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.2e-88 323.6
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.1e-52 204.1
Lcy4g0296 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.8
Lcy2g2047 . 120 379 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.0e-54 209.9
Lcy4g0296 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.2e-49 191.4
Lcy2g0055 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Lcy2g2047 . 120 369 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 5.9e-61 231.5
Lcy4g0296 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.6
Lcy2g0055 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Lcy2g0055 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.0e-38 155.2
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.6e-49 193.7
Lcy4g0296 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.7e-49 193.0
Lcy4g0296 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.8e-64 243.0
Lcy2g2047 . 173 337 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 6.6e-51 198.0
Lcy2g0055 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Lcy7g0738 . 65 344 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.8e-60 228.0
Lcy13g1687 . 58 190 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.2e-37 153.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19410 None None None None Lcy TF