Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1697 ATGGATATTACTGAGGTTGAAGAAAATCATTTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAGACTCTTTCTGCAATATATTGTAAGATATTATCAATTTTTCCTTCATTGGAAGCTGCACGACCTCGGAGCAGATCTGGTATCCAGGCATTATGTTCGTTGCATGTAGCACTTGAAAAAGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTACTGTCAAAGTTTGAGAAGGTCAAAAGTGCTCTACAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGGAGTACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAGTTGGCGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAAAAATGAGCTTGAAGCGTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATCGACCGGTCTCGCAATGAAGAGGACAAGAGGAAGGAATCAATTGTGGCATATCTTTTGCATCTCATGAGAAAGTACTCCAAGTTATTTAGAAGTGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTTGAGGACAGTGGACCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACGAAGCTTGGTTCCTTTACTTTGAAGCCCAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCAATATCATTACAGCTTATGTATGATCCAGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAAAAGTGGTTAAATGATGGCCATAACACCTGCCCAAAAACTCAACAGACACTCTCTCATCTTTCACTGACACCGAATTACTGTGTCAAGGGGCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTATTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGACTTGCGTTATCTGAATCAGAGTCTCTAAATTCGTCACCCATGGACACTGACACTCTTGGTTCTTGTAAATTAAAAGATGTTAAAGTTGTTCCGCTAGAAGAAAATGGAATAACTGAGGAGATAAAAGGAAATGTAGTGGATGATAACTCTACTGAATACCAAGAGTCCGACATAAATATGCTTACATACGAACAGTATTTGAAAGTCTTGAATGAAGAAGCTGACTTGAGGAAAAAGTCGGCGGTTGTGGAGAAAATAAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATTTTTATGGGAGCCAATGGATTTGTCCAGGGACTTCTTCGCTACTTAGAGATAGCTGTACGAGAACAAAATGTCAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGATAGGAACAAGCAAATAATGCTGGCAGAAGGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCACGGATATGCAACGGCCCTCTACCTCAATGTCTCCTGCCTGGAAGAAGCGAAAACTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAGACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGCTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGAAGCCTCCCTCGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAACTGATCAGTGGTTTGGCAGCAATATTAGACAGTGGTGAACCCATTGAGCAGGAACAAGCAGTGGCATGTCTCTTGATTCTGTGCAATGGGAATGAGAAGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGTTGGTGTCGATATCTGTGAATGGGACAGCGAGAGGTAAGGAGAAGGCTCAAAAGCTTCTAATGTTGTTCAGGGAGCAACGACAACGGGAGCCACCGGCACCGACATTGGTACTGCAACCGAAACCAACACCGACCGAGCAATCAGAGAGTAGCGAGACATCCATGCCTGGGGCGGAATCAAAGCCACTGTGCAAGTCAATTTCAAGAAGAAAAACAGCAAAAGCTTTAAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAA 2334 43.32 MDITEVEENHFAASDAKLHGGMCKTLSAIYCKILSIFPSLEAARPRSRSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKSALQDSLKRVEDIVPQSIGYQVQEIMKELGSTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDKNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRNEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKLGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLNDGHNTCPKTQQTLSHLSLTPNYCVKGLIANWCEQYGVPIPDGPPDSLDLNYWRLALSESESLNSSPMDTDTLGSCKLKDVKVVPLEENGITEEIKGNVVDDNSTEYQESDINMLTYEQYLKVLNEEADLRKKSAVVEKIRLLLKDDEEARIFMGANGFVQGLLRYLEIAVREQNVKAQESGAMALFNLAVNNDRNKQIMLAEGVISLLEEMIMNPNSHGYATALYLNVSCLEEAKTIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLLSSGIIRGLQSLLEASLDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDSGEPIEQEQAVACLLILCNGNEKCSEMVLQEGVIPGLVSISVNGTARGKEKAQKLLMLFREQRQREPPAPTLVLQPKPTPTEQSESSETSMPGAESKPLCKSISRRKTAKALSFLWKSKSYSVYQC 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 35947310 35952959 + Maker00033963 Lcy13g1697 652002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1697 777 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lcy13g1697 777 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g1697 777 SMART arm_5 545 586 IPR000225 GO:0005515(InterPro)
Lcy13g1697 777 SMART arm_5 505 544 IPR000225 GO:0005515(InterPro)
Lcy13g1697 777 SMART arm_5 460 504 IPR000225 GO:0005515(InterPro)
Lcy13g1697 777 MobiDBLite consensus disorder prediction 727 744 - -
Lcy13g1697 777 MobiDBLite consensus disorder prediction 224 247 - -
Lcy13g1697 777 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g1697 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Lcy13g1697 777 Gene3D - 11 105 IPR036537 GO:0007166(InterPro)
Lcy13g1697 777 CDD RING-Ubox_PUB 280 332 IPR045210 -
Lcy13g1697 777 SUPERFAMILY RING/U-box 279 355 - -
Lcy13g1697 777 MobiDBLite consensus disorder prediction 221 253 - -
Lcy13g1697 777 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g1697 777 MobiDBLite consensus disorder prediction 715 753 - -
Lcy13g1697 777 Gene3D - 415 717 IPR011989 -
Lcy13g1697 777 PANTHER U BOX DOMAIN-CONTAINING 22 714 - -
Lcy13g1697 777 SUPERFAMILY ARM repeat 414 710 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1697 Lcy-Chr13:35947310 Lcy5g1804 Lcy-Chr5:40796872 1.77E-41 dispersed
Lcy10g1146 Lcy-Chr10:33913305 Lcy13g1697 Lcy-Chr13:35947310 1.40E-10 transposed
Lcy6g0908 Lcy-Chr6:9232811 Lcy13g1697 Lcy-Chr13:35947310 1.92E-88 transposed
Lcy8g1345 Lcy-Chr8:40204840 Lcy13g1697 Lcy-Chr13:35947310 2.98E-17 transposed
Lcy13g1697 Lcy-Chr13:35947310 Lcy7g0059 Lcy-Chr7:472227 4.29E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1697 - - - 0.0