Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1703 ATGGCTGAGCTGCGTGATCAAGTGGACATTGAAGATCCTCAAGCTCATATTCCACTTCTTGAGTCAAATCAGAATCAGAGCTCACAACCGACATGGCTGGAAGACGACGAAGAAGCCCATTTGGAGAGTGCCCTCAAAGTGCTCGACGCATTGCTTGGCTTTTTGGGGTTCCATCAATCTTCTGTTTTGAGCTGTGCTGTGTCTTGGTCTGGTTTTGTTCTTGTCGGTATTGTTCTGCCTGTTGTGGTGCTGGAACTCACTGATTGCGCCGCCTGTGAGAAGTATCAGATTAAGGATTTTGAGCTTGACATCGTGGCCTCGCAAGCTTGTCTTGCAGCTGTGTCTCTGCTCTGTCTTTCTCATAATCTCAGAAAATATGGCATAAGGAGGTTCCTTACTGTTGATAGGCAGACCAGCTCCTTGGCTCGCTTTCGTAAAGATTATGTCAAGAAGATTCTGTTTGATGCTATGTCAGTTCCAATCAATAATGTATGTACAGGTTCGATGCGTTTGCTTCTCTTGTGGGCATTTCCATGTTTCATTCTGAAGACAGCTCGAGAGGTAATTCGAATATTATATGCGGAACGTGTATCGTGGGGATTATCTGTTGCTGTCTTACTGGCTATGACCATATCCTGGACTTATCTGAGCTTGATCTCTCTATCAGCTGCCATTGTGTTTCATTTGATGTGCAATTTGCAAGTCATCCACTTTGATGACTATGCGAAGCTGCTGCAAACAGAGTCTGAAGTTTTGTTATTAATAGAGGAGCATATTTTCCTACGCTATCATTTGTCCAAGATAAGCCACAGATTCCGAATCTTTCTTCTTCTAGAGTTCTTGGTTGTAACTGCAAGCCAATTTATGACTCTGTTCCAGACAACGGGATACAGTGCAATGGTCACTCTCATAAATGGTGGTGATTTTGCAGTCTCTGCAATTGTTCAAGTGGTTGGAGTCATTCTTTGCTTGCATGGAGCAACAAAGATTTCCCACAGAGCCCAAGGAATTGCATCAGTGGCTAGTAGATGGCATGCTTTAGTTACTTGCGGTCCAGGCGATCTATCTCAACCTCGGTATCCAAACGGTAACGGGAACTCGGAAACTCCCAGCAGACTGAACTCAATGACTAGTGCTTACTCTGAAAGTGATTTGGAGTCTCTGGACATTGTCACAATGCCTACAACCACACAGCTAGCTTCTTATATGTCCTCCTATCATAAAAGACAAGCATTTGTTATGTATTTGCAGATGAATCCTGGAGGCATTACCATTTTTGGGTGGACAGTTGACAGAGCTCTGTTAAACACCATCTTCTTTATTGAACTCACACTGGTCACCTTCGTGCTTGGGAAGACGATAGTTTTCTCCTGA 1374 43.89 MAELRDQVDIEDPQAHIPLLESNQNQSSQPTWLEDDEEAHLESALKVLDALLGFLGFHQSSVLSCAVSWSGFVLVGIVLPVVVLELTDCAACEKYQIKDFELDIVASQACLAAVSLLCLSHNLRKYGIRRFLTVDRQTSSLARFRKDYVKKILFDAMSVPINNVCTGSMRLLLLWAFPCFILKTAREVIRILYAERVSWGLSVAVLLAMTISWTYLSLISLSAAIVFHLMCNLQVIHFDDYAKLLQTESEVLLLIEEHIFLRYHLSKISHRFRIFLLLEFLVVTASQFMTLFQTTGYSAMVTLINGGDFAVSAIVQVVGVILCLHGATKISHRAQGIASVASRWHALVTCGPGDLSQPRYPNGNGNSETPSRLNSMTSAYSESDLESLDIVTMPTTTQLASYMSSYHKRQAFVMYLQMNPGGITIFGWTVDRALLNTIFFIELTLVTFVLGKTIVFS 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36015940 36019083 + Maker00033862 Lcy13g1703 652008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1703 457 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 14 456 IPR021924 -
Lcy13g1703 457 Pfam Protein of unknown function (DUF3537) 44 441 IPR021924 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1703 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1703 Lcy-Chr13:36015940 Lcy5g1459 Lcy-Chr5:35121325 4.84E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g243 . . . . . . . . . . . . . . Sed03g1519 . . Bhi04g01112 Tan02g2600 Cmetu03g0813 . Hepe10g0329 . Lcy13g1703 . . . . . . . . . . . . . . Cme03g01709 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01253 Cam08g1710 Cec08g1290 Cco08g1411 Clacu08g1407 . Cre08g1192 Lsi08g01115 Csa02g02306 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003710 1 1 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 2 1 2 1 1 1 1 1 4 1 2 46