Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1705 ATGGCAGCTGGGCGACATGGGGGTTACCGTGATAACGAGTTCAGGGACCGGGAGACCAATTTTCATGTGTCGAGGAGGTCGTTTGGCAGCGCCAGGCAAGAATTTGAAAGGGTTAAGGTCAGTCATGATGATCGTGGTATTCGTAGGAGTATAGCGCGGGACGTCAGAGATAAGGTCAGGGTAAGGCACCAGGATATGAAGGAGAACGCTGTTGTTAATGGGTATTATCATTCTTCTTCCAGTAAGAGCAATTCGGTTAATAGTGATGGTGGTGTCAGTGGCAGTGATCATGGCCCGATGCAAAATAGGGTTTCTGGTGCCATCGATAGGGAGCCGGGTGAGTTATCCAGTGAGAGTGGATCTGATGATGCCATTGAATCTGGCTTGAGGGTTAAACATAGCGAGGTTTCAAAGGTAGTCGTAAATGGGACTTTATGTCCTACGGAGAGGAAGAGAAAATTTTCGCCTATAGTTTGGGATAGGGACGACAACAAATTGAGTAATCCATCCCGGAATAGGATTGTCACAACTGTGACGGGTGTTCCACGGCCCCAAAAGTTGACTCGCCAGTCTCCTAATATTATCTCAGACCGAGGTGAACATACATCTTCAGTTAGGAATAGTGATAACGATAATTTTTCATCTTCTTCTGAATTTAAATCTCCTTTAGTCTCTGGACATGAAATGTCACAGTCATTAGCAAGGTCGTCTCCTGTTTTAGGAGAGCATTTACACCAGAATTTAGAAGTAGAAGTGTTAGATAATGAAGATAACGGCCCAACAAGGAATATCTCATTTTCACGATGGGTAGGTGGAGATACCTCTCCAGCTGATGAAGATGAGGTTCTTCTAGATGATAGAGAAATACCAAGAAAAAAGAAAATACTAAATACTGAAATTCAGGAAACTGAGGTACATCGCAAAACCTCGTGCGACTCATTTTCTGAGGTTGGGGACCTCAAGAGCAATGGTTTCAAGTCCAATGAAACGAGAGTTAGGTCGTCTGAATCTAATGAACTGGGTGCCCATTGTAGATTTTTGAGTGTGGATGAGTATCCCGGTGGTGATGTGGAAAAGGATGAATATATGGAGGTTGATGAGAGGCATGATATTAGTGATGCTTGTTTTAGTCCGTCAGATATTGATTCTGATGATGATAATGACCTTTGTGCTACACGGGAGCCTCCAGCCCCCACTCAACGAAGTGTAAACATGCTTCAGGGATGTAGAAGTGTTGATGCATTTGAGAGACTAAACAAGATTGACGAAGGCACCTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGACTGGGGAAATTGTGGCCTTGAAGAAGGTAAAAATGGAGAAGGAGCGGGAAGGGTTCCCACTGACTGCTTTGAGAGAAATAAATATTCTTCTTTCATTCCATCATCCTTCAATTGTTGACGTGAAGGAAGTCGTGGTGGGGAGTAGTCTTGATAGCATTTTTATGGCGATGGAATACATGGAGCACGATCTTAAAGGACTCATGGAGGCCATGAAACATCCTTTTAGTCAGAGTGAAGTAAAATGCCTAATGATTCAGCTATTAGAGGGTGTTAGGTATCTCCATAGTAACTGGGTGCTTCACAGGGATTTAAAGACATCTAATTTGCTTTTGAACAACCAGGGTGAATTGAAGATTTGTGACTTTGGATTGGCTCGTCAATATGGAAGTCCTTTGAAGCCATATACACATTTAGTTGTTACTCTTTGGTACAGGGCACCTGAACTTCTGTTGGGAGCAAGACAGTATTCAACAGCAATCGACATGTGGTCCTTGGGCTGTATCATGGCTGAACTTCTATCGAAGGAACCTCTTTTTAATGGGAAAACTGAAGTTGACCAACTTGATAAGATTTTTAGAACTCTTGGCACTCCAAATGAGACTATTTGGCCTGGATTCTCCAAGCTACCTGGTGTTAGAGTCAACTTTGTCAAGCATCAGTTCAACCTGCTTCGTAAGAAATTCCCTGCCACATCATTTACTGGCTCTCCGGTTCTATCTGATTCTGGGTTTGATCTGTTGAGCAAACTTCTAGCATATGATCCTGAAAAGAGAATATCAGCTGAAGAAGCTCTTGAACATGATTGGTTCCGCGAAGTGCCTCTCCCCAAGTCTAAGGAGTTCATGCCTACTTTCCCTGCTCAGCATGCTCAAGACAGGAGAATGCGAAGAATATTGAAGAGTCCAGATCCCCTTGAAGAGCAACGTATAAAGGAATTGCAGCAGCAGGAGTTAGGAACTACTGGTCTCTTTGGTGAGAGATGA 2292 43.46 MAAGRHGGYRDNEFRDRETNFHVSRRSFGSARQEFERVKVSHDDRGIRRSIARDVRDKVRVRHQDMKENAVVNGYYHSSSSKSNSVNSDGGVSGSDHGPMQNRVSGAIDREPGELSSESGSDDAIESGLRVKHSEVSKVVVNGTLCPTERKRKFSPIVWDRDDNKLSNPSRNRIVTTVTGVPRPQKLTRQSPNIISDRGEHTSSVRNSDNDNFSSSSEFKSPLVSGHEMSQSLARSSPVLGEHLHQNLEVEVLDNEDNGPTRNISFSRWVGGDTSPADEDEVLLDDREIPRKKKILNTEIQETEVHRKTSCDSFSEVGDLKSNGFKSNETRVRSSESNELGAHCRFLSVDEYPGGDVEKDEYMEVDERHDISDACFSPSDIDSDDDNDLCATREPPAPTQRSVNMLQGCRSVDAFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTALREINILLSFHHPSIVDVKEVVVGSSLDSIFMAMEYMEHDLKGLMEAMKHPFSQSEVKCLMIQLLEGVRYLHSNWVLHRDLKTSNLLLNNQGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGARQYSTAIDMWSLGCIMAELLSKEPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQFNLLRKKFPATSFTGSPVLSDSGFDLLSKLLAYDPEKRISAEEALEHDWFREVPLPKSKEFMPTFPAQHAQDRRMRRILKSPDPLEEQRIKELQQQELGTTGLFGER 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36024367 36028257 - Maker00033841 Lcy13g1705 652010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1705 763 SUPERFAMILY Protein kinase-like (PK-like) 407 712 IPR011009 -
Lcy13g1705 763 CDD STKc_CDC2L1 409 706 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1705 763 Gene3D Phosphorylase Kinase; domain 1 399 497 - -
Lcy13g1705 763 ProSiteProfiles Protein kinase domain profile. 415 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1705 763 FunFam cyclin-dependent kinase G-2 isoform X1 400 497 - -
Lcy13g1705 763 MobiDBLite consensus disorder prediction 76 100 - -
Lcy13g1705 763 MobiDBLite consensus disorder prediction 184 235 - -
Lcy13g1705 763 MobiDBLite consensus disorder prediction 76 130 - -
Lcy13g1705 763 SMART serkin_6 415 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1705 763 MobiDBLite consensus disorder prediction 8 32 - -
Lcy13g1705 763 Pfam Protein kinase domain 415 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1705 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1705 763 Gene3D Transferase(Phosphotransferase) domain 1 498 740 - -
Lcy13g1705 763 FunFam Cyclin-dependent kinase G-2 498 737 - -
Lcy13g1705 763 MobiDBLite consensus disorder prediction 1 32 - -
Lcy13g1705 763 PANTHER CELL DIVISION PROTEIN KINASE 415 706 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1705 K08818 - - csv:101221702 1219.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1705 Lcy-Chr13:36024367 Lcy9g0129 Lcy-Chr9:2818138 7.44E-73 dispersed
Lcy6g2275 Lcy-Chr6:47438428 Lcy13g1705 Lcy-Chr13:36024367 5.24E-54 transposed
Lcy7g0583 Lcy-Chr7:5163007 Lcy13g1705 Lcy-Chr13:36024367 1.26E-87 transposed
Lcy9g2355 Lcy-Chr9:47833661 Lcy13g1705 Lcy-Chr13:36024367 7.29E-79 transposed
Lcy13g1705 Lcy-Chr13:36024367 Lcy7g0070 Lcy-Chr7:687724 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g221 . . . . . . . . . . . Cma05g00638 . . . . . Bhi04g01065 . . . . . Lcy13g1705 . . . . . . . Cone4ag1847 . . . . . . . . Blo18g00051 . . . . Bma01g01305 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01180 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65582 None None None None Lcy PK