Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1712 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGAGATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCAACAGCAGCAGCAGCAACAGACTCATCAGCAGCATCAAATGATGCTTGGCGATAGCAGTGGGGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACTTGGGTTCAGGACGAGACTCGAAGCTTAATTGCCCTACGACGGGAGATGGATGGCTTGTTCAATACCTCCAAATCGAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGATTCGATCGCTCTCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCTAAGCACCATGACAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAATGCGCAGTACAAAAGCCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGACAAAGGAATTGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGAGGAAGGAGTGGATTTGCTGTTTAATTGTGGAGGGAGATTCTTGATTAGAGAACTGTTAAGTTGCATCCGTTCATCTGAGTTTCTTGTATTTCCTGTTCACCTGGAAGATTCCACCGTGTTCTCTTCTTGGTGCAAGCACATCACATATCTTGTCTTACCCTGCCCCAAATTGAGTATGTACTCAAGATCTTGTATTGCAGAAGTATAG 798 45.74 MYLSDKPRPIDIYKEEGSREMMIEVASNGDHHIQPHQQQQQQQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEEEGVDLLFNCGGRFLIRELLSCIRSSEFLVFPVHLEDSTVFSSWCKHITYLVLPCPKLSMYSRSCIAEV 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36080419 36083859 - Maker00034138 Lcy13g1712 652017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1712 265 Gene3D - 73 135 - -
Lcy13g1712 265 ProSiteProfiles Myb-like domain profile. 65 129 IPR001005 -
Lcy13g1712 265 FunFam trihelix transcription factor GT-1 73 135 - -
Lcy13g1712 265 MobiDBLite consensus disorder prediction 31 54 - -
Lcy13g1712 265 MobiDBLite consensus disorder prediction 30 72 - -
Lcy13g1712 265 Pfam Myb/SANT-like DNA-binding domain 72 156 IPR044822 -
Lcy13g1712 265 PANTHER FI21293P1 36 177 - -
Lcy13g1712 265 CDD GT1 71 136 - -
Lcy13g1712 265 SMART sant 69 131 IPR001005 -
Lcy13g1712 265 SUPERFAMILY Homeodomain-like 71 131 IPR009057 -
Lcy13g1712 265 MobiDBLite consensus disorder prediction 55 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1712 Lcy-Chr13:36080419 Lcy8g0208 Lcy-Chr8:5319287 4.15E-08 dispersed
Lcy13g1712 Lcy-Chr13:36080419 Lcy9g0974 Lcy-Chr9:32578845 5.48E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19411 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1712 - - - 0.0