Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1722 ATGGAAAATGGCTTCGCTTCTCCTCGAAGTGATGCGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCTTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTCACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTAAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTAGATGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACATGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTAAGGAATATATGGCAACACGTATTTCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCAAATCCTAAGAAATGGGTCAGATAGGTATGATGATAGCCAGTTCCTAAGAGGAGAGGAACTATTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGCATGAGGACAAAGACTTTGGGGACACTTCTTCCACAAAGAAAGCCAGAGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATTCTTGATCTGATGAGTGTCCCATGGCTCACTAGGGAAAATGTAGCTAGCCATTTGCAGAAATATCGTCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACTGATTCGAGTTCGAAGGATGGAGATGGAAACTTGAGCCTCCGTAGCTCATTAGCCGTGCCACAGAATGATGTCACAAATAGCAGCTTTAGTTTTTCAGGTGATAACTTCCTTCTTCAGAATGTAGATTCCATAGGCTGCGAAGTTGATAGGAAAAGGATTGTTCAAGAGCACACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGGTAAAGACGCGGTGTACACAAATGAAATTCAACACCTCTTTTGCCTCCGTTGAACCTGAAGGGAAGTTTGCAGCATTTGATCCAAGCAACCGAACATGTTACCCTTGGGTTGAAGCTCCAGAAATAAAGTTCAAACAAGAAAGCAAGCCACTTGTCCATTTAGAAGGAGATTTCAGACAGTTCCCTCCAACGGTTCCGCCACATCAAGTTCAAATCGACCAACTACAATCGATTTCATCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCGCCATATTCTGAGGACTGTAGTCAACAGATGGTCCATCTAAATCTACCAAAGACTCCTACTGATTCATTTTCTGGGAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGAGCCCATTTCAACTACTACCACTCCATTGGGCATGAAAAACCAGAATTTCAATCTCAGCTGCATTTCAACTGATTTGGGAAATGGGTTACCTTTTGCAACCTTTGATGAAGACTTGCAGGGTTATTTGCTTCAAGATGGTTGTTATCCAAAGAACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGTATCTTCAATGAAGTTCCTACGCACCTTTACGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1758 41.87 MENGFASPRSDAFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIQEGRDIEGHDVIEGIQILRNGSDRYDDSQFLRGEELFSVRKRKDVDKHEDKDFGDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSSSKDGDGNLSLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRIVQEHTSEPKRAAARSVPEPVKTRCTQMKFNTSFASVEPEGKFAAFDPSNRTCYPWVEAPEIKFKQESKPLVHLEGDFRQFPPTVPPHQVQIDQLQSISSISSGRSATEKDIASSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFEPISTTTTPLGMKNQNFNLSCISTDLGNGLPFATFDEDLQGYLLQDGCYPKNLEHQIIEFPDYGDPGIFNEVPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36191370 36194981 - Maker00033822 Lcy13g1722 652027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1722 585 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Lcy13g1722 585 SUPERFAMILY CheY-like 16 140 IPR011006 -
Lcy13g1722 585 MobiDBLite consensus disorder prediction 426 448 - -
Lcy13g1722 585 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Lcy13g1722 585 Gene3D - 194 257 - -
Lcy13g1722 585 FunFam Two-component response regulator 17 172 - -
Lcy13g1722 585 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Lcy13g1722 585 Gene3D - 17 167 - -
Lcy13g1722 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 318 IPR045279 GO:0009736(InterPro)
Lcy13g1722 585 FunFam Two-component response regulator 194 257 - -
Lcy13g1722 585 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Lcy13g1722 585 CDD REC_typeB_ARR-like 19 133 - -
Lcy13g1722 585 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Lcy13g1722 585 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0540 Lcy-Chr13:6767407 Lcy13g1722 Lcy-Chr13:36191370 2.41E-22 dispersed
Lcy13g0628 Lcy-Chr13:8387182 Lcy13g1722 Lcy-Chr13:36191370 1.16E-38 dispersed
Lcy13g1722 Lcy-Chr13:36191370 Lcy2g0162 Lcy-Chr2:1259169 5.58E-73 dispersed
Lcy13g1722 Lcy-Chr13:36191370 Lcy12g0777 Lcy-Chr12:10055481 1.14E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19412 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1722 K14491 - csv:101204370 1067.76