Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1727 ATGGTTTCTTGGAGTTCTTCACAACACCGCCCAAACTTTGTCTTCTCTTCGTTTCCGAACCGGGTTCCGGCCTCAAATCCTCTATTTCATGGAGTTCAATTCCGGGGTTTATCCCACCATAAGCCTTTCCTTCGTGGGTCCCTTGCGGTGGCGAGATTCGGGTTTAAACCCGAGTTCTTGCCTGACCCGGATGGCGCCGAGGGCTTTGTTAGGGGGTTGTTCGACAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTCACCACCACCACCAAGCAAACTGACGATTGGTTTACTGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACGGTTCTTGTTAAGGCTGCTACGTTTCCTTTGACGAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCGCAAGTAAAGGCTGTTCAACAACGCTATGCTGGGGATCAGCTAGCTAGAATTGTCTTCTGGATTTGTGGCATCATGATTACGATAGTTCTGGAGAGGATTCAACTTGAAACTGCTCGGCTGTACAAATTAGCTGGCATAAACCCACTTGCAGGATGCCTACCCACATTGGCTACAATTCCTGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAACGAGGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCATATCTTGTCTTGCCCGTGTTGCTGGTTGTCTCGCAGTACATCTCTGTTCAAATTATGCAATCAACGCAGAGTAATGATCCAAACATGAAGAATTCTCAAGCCATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCATCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGCGCAAAAGCCCCGGACAAACAGTTCATCGATGAAATCATCAAACAAGAACAAGCCCGTGTCCAGAGCCAAGCACCCAAGTTAAACTCAGTCTCAAGGAGCACGGTAGCCACAGCCAGACAAGAAGAGAAGCTAACAGCAGAAGGGCCAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGCTAGGATAAGACAGCAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGCAGCTAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGTGCAACAGTTGGAGTTTTTGTCAATGGCAGTCTTTCTAGACAGGATGTCAAGGAAGATCAAAACTCCACATCCACATCTACTATGCATAGAACCGACGTGGACAACGAGGTTGGCAGTACAAGTGATCATCTGCCAAGTGCAACTCAGGACGAGGGAGTATTCACCGGTGTGGCCAAGGATGCCAAACTAAATGGAGAAGATCAAATAGAGTAA 1491 46.01 MVSWSSSQHRPNFVFSSFPNRVPASNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDGAEGFVRGLFDKAESVLYTIADAAVSASPENVTTTTKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQLARIVFWICGIMITIVLERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQSNDPNMKNSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKAPDKQFIDEIIKQEQARVQSQAPKLNSVSRSTVATARQEEKLTAEGPKPGERFKQIKEQEARIRQQREEEKRKAEEAAKLESQTINDSDKSATVGVFVNGSLSRQDVKEDQNSTSTSTMHRTDVDNEVGSTSDHLPSATQDEGVFTGVAKDAKLNGEDQIE 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36240089 36244772 + Maker00033987 Lcy13g1727 652032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1727 496 NCBIfam membrane protein insertase YidC 134 330 IPR028055 -
Lcy13g1727 496 MobiDBLite consensus disorder prediction 356 421 - -
Lcy13g1727 496 MobiDBLite consensus disorder prediction 356 373 - -
Lcy13g1727 496 MobiDBLite consensus disorder prediction 434 474 - -
Lcy13g1727 496 Coils Coil 388 419 - -
Lcy13g1727 496 CDD 5TM_YidC_Alb3 135 330 IPR047196 -
Lcy13g1727 496 PANTHER OXA1 28 391 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Lcy13g1727 496 Pfam 60Kd inner membrane protein 134 330 IPR028055 -
Lcy13g1727 496 PRINTS 60kDa inner membrane protein signature 212 235 IPR001708 GO:0016020(InterPro)|GO:0032977(InterPro)
Lcy13g1727 496 PRINTS 60kDa inner membrane protein signature 296 319 IPR001708 GO:0016020(InterPro)|GO:0032977(InterPro)
Lcy13g1727 496 MobiDBLite consensus disorder prediction 376 418 - -
Lcy13g1727 496 MobiDBLite consensus disorder prediction 434 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0201 Lcy-Chr11:2407301 Lcy13g1727 Lcy-Chr13:36240089 6.57E-58 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1727 K03217 - csv:101205346 718.768