Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1730 ATGGAAAATCAAATCTTTCTTCTACTAGTAACCTTCGCCCTTCTTCTCCAAATGTGCTTCATTTCTTCGTCTCCCGTCTCCGATCCCGAACTCGTCGTCCAAGAAGTTCTCTCGAGCATCAACAACGCAACAACAAGGAGGAACTTGGGGTTCCTGTCGTGCGGAACCGGAAACCCAATAGACGACTGCTGGCGGTGCGACCCGAATTGGGAGAAGAACCGGAAGCGGCTGGCGGACTGCGCCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAGAACGGCAGATTCTACGTAGTGACGGACCCATCGGACGGCGACGTGGTGAACCCAAAACCGGGCACTCTTCGGCACGCCGTAATCCAAAACGAACCGCTGTGGATCACCTTCAAACGCGACATGGTAATAAAGCTGAAAGCAGAGCTGCTCATGAACTCGTTCAAGACGATCGACGGGCGTGGCGCGTCGGTGCACATCGCCGGCGGGCCGTGCATAACGATCCAGTTCGTGACGAACATCATAATCCACGGCATAAACATTCACGACTGCAAGCAGGGAGGGAACAGGTACGTGAGAGATTCGCCGGAGCATTACGGTTGGAGGACTCTGTCGGACGGCGACGGAGTTTCCATATTTGGAGGCAGCCATATTTGGATCGACCATTGCTCTCTGTCGAATTGCCGAGATGGGTTGATCGATGCGATTCATGGGTCGACGGCCATTACTGTTTCCAACAATTATATGACCCATCATAACAAAGTTATGCTTTTGGGACATAGTGATTCCTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGCCTCGTCCAGAGAATGCCGCGATGCCGACATGGGTATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTATGCCATTGGAGGAAGTGCATCTCCTACTATTAACAGCCAAGGAAATAGATACCTTGCTCCCAATAACCAAGATAGAAAAGAGGTTACTAAGCGTGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGATCGGAGGGAGATTTGATGTTGAATGGAGCATTCTTCACAAGGTCTGGTGCAGGATCGTCGTCCAGCTATGCGAGGGCATCGAGCTTGAGTGCAAAGTCATCGTCGTTGGTCAGTTCGATGACAGCGGGATCGGGAGTTTTGAAGTGCAGAAAGGGCTCTCAATGCTAG 1221 50.61 MENQIFLLLVTFALLLQMCFISSSPVSDPELVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGRFYVVTDPSDGDVVNPKPGTLRHAVIQNEPLWITFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNRYVRDSPEHYGWRTLSDGDGVSIFGGSHIWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNQDRKEVTKREDAPQSKWKNWNWRSEGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSSMTAGSGVLKCRKGSQC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36269656 36271740 + Maker00034263 Lcy13g1730 652035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1730 406 FunFam Pectate lyase 57 399 - -
Lcy13g1730 406 SMART amb_all 132 329 IPR002022 -
Lcy13g1730 406 Pfam Pectate lyase 144 321 IPR002022 -
Lcy13g1730 406 Gene3D - 57 399 IPR012334 -
Lcy13g1730 406 PANTHER PECTATE LYASE 18-RELATED 14 403 IPR045032 GO:0030570(InterPro)
Lcy13g1730 406 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Lcy13g1730 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1880 Lcy-Chr10:42959838 Lcy13g1730 Lcy-Chr13:36269656 5.28E-240 dispersed
Lcy11g1745 Lcy-Chr11:41250075 Lcy13g1730 Lcy-Chr13:36269656 2.13E-213 dispersed
Lcy13g0445 Lcy-Chr13:5232370 Lcy13g1730 Lcy-Chr13:36269656 1.00E-217 dispersed
Lcy13g1730 Lcy-Chr13:36269656 Lcy5g2168 Lcy-Chr5:44640219 1.29E-234 dispersed
Lcy13g1730 Lcy-Chr13:36269656 Lcy12g2053 Lcy-Chr12:41846793 4.65E-215 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1730 K01728 - csv:101208076 731.865