Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1745 ATTTACTTTAAGCAGTTGGCTCACAGTCTTCAAAGCCGTTGGAGTGTTTCTCTTTCGAAAAACTCCGGCAAGAAGATGAGCGATGGACCCTCTGCATTGCGATTTACCGACTCCTCTTGTTGCCTGAAGCGCAAAAGACCTCCCAAGATCCAGATCCCTAACGTCTTACAAGAGATTCATGCCCAAAAACTTGAAGACGCCACTCCCCGAACCGATTCCGTCTCTTCCGATTTTGCAGATCGTGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGATACTCACAAGATCGTTCCTTGCTTGAAAGGCCACTTAAATGATGCCTTTTTTGGCGTTTACGATGGCCATGGAGGCAGGAAGGCAGCGAAATTTGTTGCAGAAAATTTGCACAATAACATACTTGAAGTGGTGGGCAATTGCTCGGGATCTGCAGAGAAGGAGGAAGCAATTAAAGCTGCTTTCTTGAGAACGGACCGAGACTTCTTGAATCTGGGTGTAGCGAGTGGTGTCTGCTGTGTCACAGCTCTGCTACAAGGAGAAGAAGTTGTTGTTTCCAATTTGGGAGATTGTAGGGCTGTTCTTTCTAGAGGTGGAGTAGCTGAAGCAGTAACAAAAGACCATAGAGTTGAACAGGAGGATGAGCGGAAAAGAATAGAAAACAAGGGTGGATACGTTGAGATTCATAGGGGGGCATGGAGAGTTCACGGAGTTCTTTCTGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTCCTGGCAGAGCCTGATTCAAAGGTCCTACTTCTTAGTGAAGACATGGAGTTTCTTGTTCTAGGCACTGATGGGCTATGGGAAAAGGTTGGAAACCAGGAGACTGTTGATGTTGTGACACGATTGAGGTTGATGGATAAAAGTTTTGGGCAATCAAAAGGTTCCTTGAGAAGCATTAGCCATGCCCATTGCTCTGTGAATCCAAGTCCATCAAAACTACGGAGAGTTTCATTAGTCACGCAACCAAAAGGGGGGGTGGGCCAGTCTCCAATCTGTGAGAAGGCAAATGATAGCTGTGAAGAAGGTGAATACGACTATGCTTGTGAAATTGAAAGTCCTGGATCAAAATCAAGAAGAATATCATTGGTCAGACATAAAAAGATGAAGACAGAATCTTCACCTAAGGAGAATATTGATGATTGCTGTAGGAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAGATTTAGCTCTGAGTAGGGGTAGTCTGGATGACATTACCCCCGAACTCCATTTCCAACTTCTAGACACAATTTTCTTTGTTGGATCATACCAAGCCATGCATGATTCAATTGGAATTCCTGCTTGCTTCTCATTTGGGGAGAGGCCAAGTAATGATCCAGCTTCAGTAATCAGGTCAGGCCAGAGTGTGTTTATGTCAGTGTATCAAACAAAGATCGTTGGTCAGTGTCGCCTCATCACAGTCACTTGGTGTAAGAATCTGTTACTTCATGGTCTTTCCATCTGTGTTCAAGGACCAGAAGGAAACCAGCAATATCAGTGTAAGGTTGAGATGAAGCCATGGTACTTCTGGAGAAAACAAGGTTCTAAGCATTTTGAAGTCGACGGTCGAGCTGTGGATGTGGTTTGGGACCTCAAGAGTGCAAAATTCAATGGAGAGACAGAGCCACAGTCAGATTACTATGTGGCAGTTGTCTGTGAAGAAGAAGTTGTTTTACTTATTGGGGATCTCAAGAAAGATGCCTTCAGAAAGACAGGTTGTCGGCCAGCTCTGATTGAGCCGACTCTAGTTTCAAAGAAGGAACATGTATTTGGCAAGAAAATGTTCTCCACCAGAATTCAGTTCCATGAGAAAGGCAAGCTCCACACCATCTCAATTGAGTTCATCAACGTCAACACAAATCCCAGTCTTTCTGATTCATTCGATCCAGAACTGGAGCTGAGGATCGACGGGCAACCAGCAATCAAGATCAAGCACCTTCACTGGAAGTTCAGAGGCAATGAATCTGTATTAATCAGCAGAACAAGGTTAGAAGTTTACTGGGATGTTCATGATTGGCTGTTTGGTTCTGGTCCAAGGTACGGCCTTTTCATATTCAAGCCAATGTCATCATGGTCTGACTCTCCATCATCATCACTTGCATCAACATCGCCACCTGCTCCACCCTCTTCTTTAACTCCAACAGGAATGTCCATTAGAGAAGTGATTTCCACTTCTGGAGAGGTTGAAAATGCAGGTGGATCTTCCAAATTTTGCTTATTTCTCTATGCTTGGAAGATGGAATGA 2307 44.52 IYFKQLAHSLQSRWSVSLSKNSGKKMSDGPSALRFTDSSCCLKRKRPPKIQIPNVLQEIHAQKLEDATPRTDSVSSDFADRVGVFSVKGKKRFMEDTHKIVPCLKGHLNDAFFGVYDGHGGRKAAKFVAENLHNNILEVVGNCSGSAEKEEAIKAAFLRTDRDFLNLGVASGVCCVTALLQGEEVVVSNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIENKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLGTDGLWEKVGNQETVDVVTRLRLMDKSFGQSKGSLRSISHAHCSVNPSPSKLRRVSLVTQPKGGVGQSPICEKANDSCEEGEYDYACEIESPGSKSRRISLVRHKKMKTESSPKENIDDCCRKRPTSSRLVAACKELVDLALSRGSLDDITPELHFQLLDTIFFVGSYQAMHDSIGIPACFSFGERPSNDPASVIRSGQSVFMSVYQTKIVGQCRLITVTWCKNLLLHGLSICVQGPEGNQQYQCKVEMKPWYFWRKQGSKHFEVDGRAVDVVWDLKSAKFNGETEPQSDYYVAVVCEEEVVLLIGDLKKDAFRKTGCRPALIEPTLVSKKEHVFGKKMFSTRIQFHEKGKLHTISIEFINVNTNPSLSDSFDPELELRIDGQPAIKIKHLHWKFRGNESVLISRTRLEVYWDVHDWLFGSGPRYGLFIFKPMSSWSDSPSSSLASTSPPAPPSSLTPTGMSIREVISTSGEVENAGGSSKFCLFLYAWKME 768
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 36385780 36391134 - Maker00033872 Lcy13g1745 652050
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1745 768 MobiDBLite consensus disorder prediction 717 736 - -
Lcy13g1745 768 Pfam Plant protein of unknown function (DUF868) 473 766 IPR008586 -
Lcy13g1745 768 Gene3D - 70 428 IPR036457 -
Lcy13g1745 768 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169(InterPro)
Lcy13g1745 768 SMART PP2C_4 71 431 IPR001932 -
Lcy13g1745 768 Pfam Protein phosphatase 2C 82 298 IPR001932 -
Lcy13g1745 768 CDD PP2Cc 81 296 IPR001932 -
Lcy13g1745 768 ProSiteProfiles PPM-type phosphatase domain profile. 81 433 IPR001932 -
Lcy13g1745 768 PANTHER EXPRESSED PROTEIN 453 766 IPR008586 -
Lcy13g1745 768 SUPERFAMILY PP2C-like 79 427 IPR036457 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1745 Lcy-Chr13:36385780 Lcy5g1681 Lcy-Chr5:39092994 3.03E-76 dispersed
Lcy13g1745 Lcy-Chr13:36385780 Lcy4g0673 Lcy-Chr4:8138087 5.45E-33 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1745 - - - 0.0