Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1750 ATGTCTAGCGCCGCCGTGATCGGACATTCTAGCTCCTGGTCTCGCGCCCTCGTCAATATCTCGCCGTACACTTTCTCCGCCGTCGGCATCGCCATCGCCATCGGTGTTTCCGTCCTCGGCGCCGCTTGGGGAATTTACATAACGGGAAGCAGTTTGATTGGTGCGGCGATTAAAGCTCCTCGTATTACTTCGAAGAACTTGATTAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTTATTGTTGCCATTATCTTACAGACCAAGTTAGAGAGTGTATCAGCATCTCAGATATATTCCCCTGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATTGTTGGCTTTGCAAACCTTGTCTGCGGGCTGTGCGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAATTCCTCTCTCTTTGTGAAGATTCTTGTAATCGAGATCTTTGGCAGTGCACTCGGGTTGTTCGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 47.54 MSSAAVIGHSSSWSRALVNISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYSPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36454459 36456120 + Maker00034183 Lcy13g1750 652055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1750 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Lcy13g1750 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Lcy13g1750 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Lcy13g1750 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Lcy13g1750 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 9 175 - GO:0016021(PANTHER)
Lcy13g1750 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Lcy13g1750 182 Gene3D - 23 177 IPR035921 -
Lcy13g1750 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1750 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1750 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1750 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy13g1750 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy13g1750 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1750 Lcy-Chr13:36454459 Lcy9g1819 Lcy-Chr9:43315093 2.30E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1750 K03661 - csv:101221052 324.709