Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1755 ATGTCAAGAAACTTCTGGATATTGCAGAAAAGGCCATGGGATGGGACAGTCCACGATAATGTTTTGGCCCTTTTGGGCTGCAGGCCTGCCATGGTTGAGAGCACAGAGAAACCATTCTACACCACAACATATTTTACGATCTTCTTGAGTTGGGCTGCTGTTTCATTCATGGGTACAGCTTCAACTGGGTACCCATTTGGAATCGCTGTCCATTCAAATGGAAACTCTGCCTTCTCGTCTCATAAATTGGAATTTTCGCGCTCTAATTTCCCTCTCCACGGTGAATTTTCTAGAACCAATCCGCACTCGGGCTCTGTTCTCAATATTTCTTCCAAGTCACTAGTTTATAAGATCCGTTGTTTACCTGATATTGATAATATCTTTTGGGATAAAGTTCCAACGCCCATCCTTGATGTGATTGAGAATCCTATCCATTTGAAGAATTTGTCGCCTAAGGAATTGAAACAGTTAGCTGATGAAATTCGTTCGGAGCTGTCTTCCTATCTTTCAAACTTACAGAAGTCTTATAAGGCCAGTTTGGCAGTGGTGGAGCTGACTGTTGCCTTACACCATGTTTTCCATGCTCCAGTGGACAAGATACTGTGGGATGCAGGAGAAGAGGCATATGCACACAAGATTCTTACTGGAAGACGATCTCTCATGAGTACATTGCGTAAAAAGAATGGTCTTTCTGGGTCAACATCTCGGTCTGAAAGTGAATTTGATCCATTTGGTTCTGCACATGGCTGCAACAGTGTATCTGCTGGACTTGGCATGGCAGTAGCACGGGATATAAAAGGTAAGCGTGAAAGAATAGTTACGGTAATTAACAATGGGTCAACTATGGCGGGGCAAATATATGAAGCAATGAGTAATGTGGGATATTTGGACTCAAATATGATAGTGATCTTAAATGATAGTCGGCATTCTTTACACCCAAAACTTGATGAGGGCTCTAAGACATCTGTCAATGCTTTGTCTAGCACCCTCAGCAGGCTGCAGTCCAGCAAATCCTTTCGAAAGTTTCGTGAAGCTGCTAAGGGTGTAACTAAAAGAATTGGTAAGGGAATGCATGAATTAGCTGCCAAGGTTGACCAATATGCTCGGGGTATGATGGGTCCCTCCGGATCAACCCTTTTTGAAGAACTTGGACTTTATTATATAGGCCCTGTTGATGGCCACAATATGGAGGACCTTATTTGTGTTTTACAAGAAGTCGCATCACTTGATTCGATGGGTCCTGTTTTGGTGCATGTCATAACTGAAGAAAATTATACAGTAGGTTGTCAGAGGGGTGCAGACAAGCAACTAGAAGCAAGTTCTATTCTGATTAATTCACTCTGGTTCTTACTTGTGGTGCATGATGTTGATCAGCAGAAAATTCCTGTACGTTTTGTCATTACTAGCGCTGGATTGGTAGGATCTGATGGTCCTATGCAATGTGGTGCATTCGATATAACGTATATGTCATGCTTGCCAAACATGATTGTCATGGCACCATCAGATGAGAATGAGCTAGTGAACATGGTAGCCACTGCAGCACGCATCGATGATCAACCAGTATGCTTTCGATATCCAAGAGGCTCCATTGTCACTACTGACAACCTTGCCCTTGAAGGGGTTCCCATTGAAATTGGAAAAGGGAGGGTTCTTGCTGAGGGCAAGGATGTTGCTTTGCTTGGGTATGGGGCAATGGTTCAGAATTGCCTTAATGCTCGGGCCCTTCTCTCAAAGTTCGGTGTTGAGGTTACCGTTGCTGATGCAAGGTTCTGCAAACCACTCGACATAGCGCTTCTCCGACAACTTTGTGATAACCATGCATTTCTAATCACAGTTGAGGAAGGTTCGATTGGAGGCTTTGGATCTCATGTAGCACAATTCATCGCTCTTGATGGACGGCTAGATGGAAGAACCAAGTGGCGACCGATAGTTCTACCAGATAATTACATAGAGCAGGCATCTCCACAAGAACAGCTCTCCCTAGCCGGGTTGACCGGAAATCACATAGCTGCAACGGCATTAAGCCTGCTCGGCCGCCCCCGTGAAGCACTACTCATGATGTGTTAG 2067 44.36 MSRNFWILQKRPWDGTVHDNVLALLGCRPAMVESTEKPFYTTTYFTIFLSWAAVSFMGTASTGYPFGIAVHSNGNSAFSSHKLEFSRSNFPLHGEFSRTNPHSGSVLNISSKSLVYKIRCLPDIDNIFWDKVPTPILDVIENPIHLKNLSPKELKQLADEIRSELSSYLSNLQKSYKASLAVVELTVALHHVFHAPVDKILWDAGEEAYAHKILTGRRSLMSTLRKKNGLSGSTSRSESEFDPFGSAHGCNSVSAGLGMAVARDIKGKRERIVTVINNGSTMAGQIYEAMSNVGYLDSNMIVILNDSRHSLHPKLDEGSKTSVNALSSTLSRLQSSKSFRKFREAAKGVTKRIGKGMHELAAKVDQYARGMMGPSGSTLFEELGLYYIGPVDGHNMEDLICVLQEVASLDSMGPVLVHVITEENYTVGCQRGADKQLEASSILINSLWFLLVVHDVDQQKIPVRFVITSAGLVGSDGPMQCGAFDITYMSCLPNMIVMAPSDENELVNMVATAARIDDQPVCFRYPRGSIVTTDNLALEGVPIEIGKGRVLAEGKDVALLGYGAMVQNCLNARALLSKFGVEVTVADARFCKPLDIALLRQLCDNHAFLITVEEGSIGGFGSHVAQFIALDGRLDGRTKWRPIVLPDNYIEQASPQEQLSLAGLTGNHIAATALSLLGRPREALLMMC 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36481658 36486648 + Maker00034197 Lcy13g1755 652060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1755 688 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 546 678 - -
Lcy13g1755 688 Pfam Transketolase, C-terminal domain 546 669 IPR033248 -
Lcy13g1755 688 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 153 430 IPR029061 -
Lcy13g1755 688 Gene3D - 546 677 IPR009014 GO:0003824(InterPro)
Lcy13g1755 688 Gene3D - 440 538 - -
Lcy13g1755 688 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 137 421 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Lcy13g1755 688 Gene3D - 129 427 - -
Lcy13g1755 688 Pfam Transketolase, pyrimidine binding domain 452 529 IPR005475 -
Lcy13g1755 688 CDD TPP_DXS 178 422 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)
Lcy13g1755 688 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 452 556 IPR029061 -
Lcy13g1755 688 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 116 427 IPR005477 GO:0008661(InterPro)|GO:0016114(InterPro)|GO:0016744(PANTHER)
Lcy13g1755 688 SMART Transket_pyr_3 347 533 IPR005475 -
Lcy13g1755 688 SUPERFAMILY TK C-terminal domain-like 541 677 IPR009014 GO:0003824(InterPro)
Lcy13g1755 688 CDD TPP_PYR_DXS_TK_like 452 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1755 K01662 - - gmx:100793268 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1755 Lcy-Chr13:36481658 Lcy6g1098 Lcy-Chr6:12338966 2.83E-163 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g434 . . . . . . . . . Cmo12g00271 . . . Car12g00300 Sed03g1587 Cpe07g00279 . Bhi04g01008 Tan02g2694 Cmetu03g0115 . Hepe10g0276 . Lcy13g1755 . . . . . . . Cone4ag1813 Cone7ag1723 . . . . . Cme03g01650 Blo17g00027 . . Bda13g01272 Bpe14g00571 . . Bma02g00033 . . . . Cma12g00319 . . . . . . . . . . . Cla08g01305 Cam08g1766 Cec08g1347 Cco08g1468 Clacu08g1462 . Cre08g1249 Lsi08g01169 . Chy03g01151 .