Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1756 ATGAGCAACGCTTCAATCATAGTCCCACTGCCGTCGAACCTCCTAACGGATGTGGCGAGTCCGGACTGGTTGAGCAAAGGCGACAACGCATGGCAGTTGACGGCGGCGACGCTGGTGGGGCTGCAGAGCGTGCCGGGTCTGATAATCCTGTACGGCGGGGCGGTGAAGAAGAAATGGGCGATAAACTCGGCGTTCATGGCCCTGTACGCGTTCGCGTGCGTGCTGGTGTGCTGGGTGTGCTGGGGGTACCGGCTGTCGTTCGGGGATAAGCTGCTGCCGTTCTGGGGGAAGCTGAACACGGCGTTGGACCAGAAATTTCTGCTGGATCCGGCGTTCAGCGGGAAGTTCCCGTCGGCGACAATGGTGTTTTTCCAGTTCGTGTTCGCGGCGATTACTCTGGTTCTGATCGCGGGCGCTCTGCTGGGGCGGATGAACTTTTACGCTTGGATGCTGTTCGTGCCGCTTTGGTTGACGTTTTCTTACACTTTCGTGGCGTTTAGTATTTGGAGTCCTACGGGTTTTTTCGCTAAGAAAGGACTTATTGATTATTCCGGTGGCTATGTTATTCATTTGTCTTCTGGAGTTGCCGGCTTCACCGCTGCCTATTGGGTTGGGCCACGGCTGGCGAAAGACAGAGAAAGCTTCCCTCCAAACAACATTCTTCTGATGCTGGCCGGAGCCGGGTTGTTGTGGATGGGTTGGACCGGGTTCAACGGCGGAGACCCGTACGCCGCCAACGTCGACGCCTCACTGGCGGTTCTGAACACGCACGTGTGCACCGCCACCAGCCTGCTGACGTGGCTCATCTTCGACATCGTCTTCTTCAGAAAGCCCTCCGTCATCGGCGCCGTCCAAGGCATGATCACCGGCCTCGTTTGCATCACCCCCGCCGCAGATCTTGTGCTACTTTCTGATTAG 918 57.3 MSNASIIVPLPSNLLTDVASPDWLSKGDNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVCWGYRLSFGDKLLPFWGKLNTALDQKFLLDPAFSGKFPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPTGFFAKKGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLAKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANVDASLAVLNTHVCTATSLLTWLIFDIVFFRKPSVIGAVQGMITGLVCITPAADLVLLSD 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36492595 36497950 + Maker00034023 Lcy13g1756 652061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1756 305 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Lcy13g1756 305 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005886(InterPro)
Lcy13g1756 305 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Lcy13g1756 305 Pfam Ammonium Transporter Family 30 301 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy13g1756 305 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy13g1756 305 SUPERFAMILY Ammonium transporter 23 301 - -
Lcy13g1756 305 Gene3D Ammonium transporter AmtB like domains 12 304 IPR029020 -
Lcy13g1756 305 PANTHER AMMONIUM TRANSPORTER MEP2 21 301 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1733 Lcy-Chr11:41149351 Lcy13g1756 Lcy-Chr13:36492595 9.33E-12 dispersed
Lcy13g1756 Lcy-Chr13:36492595 Lcy1g0585 Lcy-Chr1:4982309 7.88E-140 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1756 K03320 - csv:101210590 563.148