Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1757 ATGGGGGCTCCATTCGAGGGAATAGTAAGCGATATCAAGGGGAGGGCTGCGTGCTATAAGCAGGATTGGATATGTGCACTATGTTCAGGCGTCAGGATTTTAGCTCCCACTATGTACATCTTCTTCGCCTCTGCTCTTCCTGTTATTGCCTTCGGAGAGCAACTTAGCAGGGATACAGGTGGAAGTTTGAGCACAGTGGAAACATTAGCCTCAACTGCGGTGTGTGGAATTATCCACTCCATATTTGGGGGACAGCCTTTGCTGATTTTAGGAGTGGCAGAACCAACAGTTATAATGTACACTTACTTGTACACTTTCTGTAAAGGTCGACCCGAGTTAGGAGGCGAACTCTTTTTAGCCTGGGCTGGATGGGTGTGCATCTGGTCAGGATTTTTCCTGATTCTCCTTGGGATCTTTAATGCTTGCTCCGTCATCACCAAATTTACAAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTTCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCACGATTCCCAAGTCAGAAAATCCAAAGCTATTGGAGTACCAATTTCAATGGTTGTACGCAAATGGGTTGCTTGCTATCATTTTTTCCGTCGGTCTACTCTTCACTGCCCTGAAAAGCAGACACGCAAGATCGTGGAAATATGGCACCGGCTGGTTTCGGAGTTTCATTGCTGACTACGGGGTTCCGCTTATGGTCGTGTTATGGACAGCAATGTCTTATGGAGTTCCCAGCAAGGTTCCAGATGGAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAGCCGGCCTCATTGTACCACTGGACTGTAGTCAAGGACATGGGGAAGGTTCCATTGACTTACATCTTTGCTGCTTGTCTACCAGCCGTGATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCACAAATGGCACAACAAAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTTTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAACGGTGTACTCCCACAGTCCCCAATGCACACCAAGAGTCTCGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAGGGAATGTATCAAACGAAAAGCGAGCAACTCTGAAATTTATGGAAAGATGCAAGCTCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTAATGAACGCCGATGAAGGTGATAGGAAGGGAAAATTCGACGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAACAAAGAATGAGCAACTTGCTGCAGTCCTTCCTTGTGGCCGCATCAATATTTGCTATCCCTGTAATAAAAATGATACCCACTTCAGTTCTTTGGGGATACTTTGCTTATATGGCCATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTGTTGCTCTTCATTACCCCCAGCCGGCGTTTCAAGGTCTTGGAGGGGTCTCATTTATCGTTCGTCGAATCGGTGCCATTCAAGACCATTGCTTCGTTTACCCTCCTTCAGTTTGCATATTTCTTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATATACTTCCCAAGTTCTTCCAGCACAACCATCTGCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCTCGACGTCGCGCCGTGAATCTCACAGCTCCGGAAAAGGAGCCACCAGATTCAGTTGCGGACGAGAGTAACGAAGAATACTACGATGCCGAGATATTAGACGAGATGACGACTCATAGAGGAGAATTGAAGCTTAGAACTGTAAGTTTCAATGAAGAAAGGTTCATCCTGAAGATTCCCATCGATTACAATGAAGCAGTTGGAGACGAATAG 1965 45.14 MGAPFEGIVSDIKGRAACYKQDWICALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGSLSTVETLASTAVCGIIHSIFGGQPLLILGVAEPTVIMYTYLYTFCKGRPELGGELFLAWAGWVCIWSGFFLILLGIFNACSVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFTIPKSENPKLLEYQFQWLYANGLLAIIFSVGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVLWTAMSYGVPSKVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAACLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSARECIKRKASNSEIYGKMQAPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAASIFAIPVIKMIPTSVLWGYFAYMAIDSLPGNQFWERMLLLFITPSRRFKVLEGSHLSFVESVPFKTIASFTLLQFAYFLLCFGVTWIPVAGILFPLPFFLLISIREHILPKFFQHNHLQELDASEYEEIAGARRRAVNLTAPEKEPPDSVADESNEEYYDAEILDEMTTHRGELKLRTVSFNEERFILKIPIDYNEAVGDE 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36506590 36510776 + Maker00033777 Lcy13g1757 652062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1757 654 PANTHER ANION EXCHANGE PROTEIN 3 624 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Lcy13g1757 654 Gene3D Helical hairpin bin 15 57 - -
Lcy13g1757 654 FunFam probable boron transporter 2 15 57 - -
Lcy13g1757 654 Pfam HCO3- transporter integral membrane domain 4 178 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy13g1757 654 Pfam HCO3- transporter integral membrane domain 435 577 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Lcy13g1757 654 Pfam HCO3- transporter integral membrane domain 195 371 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1757 Lcy-Chr13:36506590 Lcy5g2218 Lcy-Chr5:45181678 2.12E-261 dispersed
Lcy12g0614 Lcy-Chr12:7500742 Lcy13g1757 Lcy-Chr13:36506590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1757 K24194 - csv:101220188 1187.94