Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1768 ATGCACCTCAAGTCATTTCCATTGGCCCTTTTCACCATGGGTCAAAAGCATTTGGAGGCCATGGAAGGACATAAGCTTATGGGTCTCAAAATTTACCTACATCGTATAAACATGAGAGTTGAGGTTGCCATCAGAATTGCTCAAAATTGGGTAGGGAAAGCTCGTGGTTACTATGCAGAGCCCATTAACATGTACGACGACGAGTTTGTGAAAATGATGCTTGTGGATGGTTGCTTTCTACTGGAGTTTATGATACTGGCTTATCACAACTTCTCTCCACCAGATCAAATTCTAACGTTAGATTGCTCGTTCTATGGAGCTATGAGGAATCATTTATATTACGATATTATGATGCTTGAGAATCAACTTCCTCTCTTTGTTCTCGAAGGTCTATTTAACCAACTTGGAGCCTACCAAGACACTGGCATGGAAAGACTCTCCTTTGAGGTTCTTATACAAATTTTTCTTGAATATGGGTGCATTAAATCATATGATCGGCTCTCCCAAATTGTCATCAACAGAAATGCAAATCACTTGGTCCATTTGTTGAGAGACTACTACAGCTTCTCAATTGTTAAGGATAGGACGAAAAACAATGATTCGTCCGAGCAGAGGGGTTTTTTGCTTCCCCCAACTTTAACTGAGCTGTGGGAGGCTGGTGTCACCATCAAGAAAGCATCAGAAGAGATTCATTTCATGGACATAAGTTTCAAAGATGGGGTTCTAGAAATCCCACATTTCGAAATTGACGATCAATTTGAAACCCGTGTAAGAAATCTAATGGCTTTTGAGCAGTACCAGTACTTGAGGACAGATCAAACATATGTAACCAACTACATGTCATTTCTAGATGGCTTGATAAGCACGGAGAAAGACGCAAGTTTACTTGTGAAGGCAGAAATCTTAACCAACAATATTGGTGGCAGTAATGAAGAAGTTTCAAAACTGTTCAATGATTTATGTAAAGGAATAACACTCCCAGGCCATGACTATTACTACTACAATATGACCAAAGCTTTAAGTAAGTATTGCAAGACGATGAAGCATCGATGGATGGCTTCATTGAGACGTGACTATTTTAATACGCCATGGGCTGCTATCTCCTTTGTTGCAGCAACTTTATTCATTCTTCTCACTTTCATTCAAACCATATACTCTCATCTATCGTATTCCAAGCACCCTCCAACTGCAACCAAGCTTTGTGATGCTAGTGTCAAGTTTCAAAATGCAACACAAACCAAACACATTATGGACATAAACTTCCACGACGGAGTTCTAGAAATCCCACCTTTCGAAATCAGTGACATCGTTGAAACCAATATGCGAAACCTTATGGCATTTAAGCATTACCACATAGGGAGTAATAAGAGCGAAGCTTTACTTAAGCATTTTAGTGCACGATGGAACAAGTGGAAAGCTTCACTGAAACGTGATCATTGCAATACTCCATGGACTCTTATCTCTTCCATTGCTGCTACTGTCCTCATTCTTTTCACTGCTCCACAAGTTCTATTCGCTGTTGTACCACTTTCCAAGTAA 1539 39.9 MHLKSFPLALFTMGQKHLEAMEGHKLMGLKIYLHRINMRVEVAIRIAQNWVGKARGYYAEPINMYDDEFVKMMLVDGCFLLEFMILAYHNFSPPDQILTLDCSFYGAMRNHLYYDIMMLENQLPLFVLEGLFNQLGAYQDTGMERLSFEVLIQIFLEYGCIKSYDRLSQIVINRNANHLVHLLRDYYSFSIVKDRTKNNDSSEQRGFLLPPTLTELWEAGVTIKKASEEIHFMDISFKDGVLEIPHFEIDDQFETRVRNLMAFEQYQYLRTDQTYVTNYMSFLDGLISTEKDASLLVKAEILTNNIGGSNEEVSKLFNDLCKGITLPGHDYYYYNMTKALSKYCKTMKHRWMASLRRDYFNTPWAAISFVAATLFILLTFIQTIYSHLSYSKHPPTATKLCDASVKFQNATQTKHIMDINFHDGVLEIPPFEISDIVETNMRNLMAFKHYHIGSNKSEALLKHFSARWNKWKASLKRDHCNTPWTLISSIAATVLILFTAPQVLFAVVPLSK 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36625165 36628003 - Maker00033842 Lcy13g1768 652073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1768 512 Pfam Plant protein of unknown function 14 378 IPR004158 -
Lcy13g1768 512 Pfam Plant protein of unknown function 458 497 IPR004158 -
Lcy13g1768 512 Pfam Plant protein of unknown function 391 454 IPR004158 -
Lcy13g1768 512 PANTHER BNAC04G53230D PROTEIN 392 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1768 Lcy-Chr13:36625165 Lcy1g2167 Lcy-Chr1:30972141 9.41E-130 dispersed
Lcy13g1767 Lcy-Chr13:36603279 Lcy13g1768 Lcy-Chr13:36625165 7.25E-173 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g454 . . . . . . . . Cmo05g00404 . . Cma05g00393 . . Sed08g1315 . . Bhi04g00983 Tan02g2709 Cmetu01g0189 . Hepe10g0266 . Lcy13g1768 . . . . . . . . . . . . . . Cme03g01633 . . . . . . . . . . . . . . . Cpe11g00336 . . . . . . . . Cla08g01321 Cam08g1782 Cec08g1360 Cco08g1487 Clacu08g1476 . Cre08g1265 Lsi08g01189 . Chy03g01135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000204 0 10 0 0 0 5 0 11 3 11 4 4 8 15 11 14 4 0 7 7 7 2 2 6 7 13 6 8 4 2 171