Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g1788 | ATGATGATTTACTGTGACGTTTGTTCCTTTCAGCCAATGGAAATTTATGTAGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGACGCGCTTGATTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCTACAGATTTGGTTGGTCGAGGTATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGACTCGGCTGATACTTATCTACACAGGGTTGGAAGAGCGGGTAGATTTGGTACCAAAGGGCTTGCAATTACTTTTGTATCGTCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACAGTATGTTTTCTTGTTTCATTTTTTTGATGGGATTATTTTCCTTTTGGAACTCCGGTTTCTTTGCCATCATAGATGTAGAGATTTTCAGCATAGAATATCGGCTACCTGGGTTGGCGGGGGTGGTTCTCCTGTCATTGTGGTTTGATTTTGATTCAGACTAA | 729 | 40.6 | MMIYCDVCSFQPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSMFSCFIFLMGLFSFWNSGFFAIIDVEIFSIEYRLPGLAGVVLLSLWFDFDSD | 242 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 36859274 | 36864653 | - | Maker00033809 | Lcy13g1788 | 652093 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g1788 | 242 | Pfam | Helicase conserved C-terminal domain | 40 | 148 | IPR001650 | - | |
| Lcy13g1788 | 242 | FunFam | DEAD-box ATP-dependent RNA helicase | 24 | 192 | - | - | |
| Lcy13g1788 | 242 | CDD | SF2_C_DEAD | 28 | 157 | - | - | |
| Lcy13g1788 | 242 | SMART | helicmild6 | 67 | 148 | IPR001650 | - | |
| Lcy13g1788 | 242 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 43 | 188 | IPR001650 | - | |
| Lcy13g1788 | 242 | Gene3D | - | 24 | 192 | IPR027417 | - | |
| Lcy13g1788 | 242 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 24 | 183 | IPR027417 | - | |
| Lcy13g1788 | 242 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 11 | 175 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g1788 | Lcy-Chr13:36859274 | Lcy5g0347 | Lcy-Chr5:3494271 | 7.42E-22 | dispersed | |
| Lcy13g1788 | Lcy-Chr13:36859274 | Lcy13g2195 | Lcy-Chr13:40870732 | 5.57E-23 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g1788 | K12812 | - | csv:101217346 | 353.984 |