Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1792 ATGGGAACGAGCGGGTTTGGTGGTTGTTTGATGGTTATTATATGGTTGACTGTTCTTCTCCTTCGGTCGAGACCTTGCTCCGCTGGTTTTCAGAGCGTTGGGCAGATTTCTCCAGGGCTTCGAGGAACTCAGATGAACTGGGTCGATCGCGATGGGGTGTTTCTTCTATCCAATAATTCTAAATTTGGGTTTGGATTCACCAATCCAGGGGTAGTAACGGAGTATTTTCTAGCAATCATTCACTTGGGCAGCAGGAAAATCGTCTGGACTGCGAATCAGGCCTCTCCGGTTACGAATTCAGATGAATTCGTGTTCGACGAGAAAGGTAATGTAATTTTATACCATGAAAGCAATGTAGTTTGGTCTACGAACACCACGAACAAAGGAGTCTCTGCTCTCGCGTTAATGGATTCTGGAAACTTGGCTTTGCTTGGAAGTGATAATGCGGTGATTTGGGAAAGTTTTGGCCATCCGACTGATACCCTTTTGTCGAATCAGAGTTTTGTAGAGGGAATGAGGCTTGTAAGTAAGCCCGATTCGAATAATTTGACCTATTTTCTGGAATTGAAATCTGGGGACATGGTTTTATCTGCAGGATTCAAAACCCCACAAACGTATTGGTCAATGAGCAAAGAGAATCGCAAAACAATCAACAAAGATGGTGGGTCTGTAATCTCTGCAACTCTCACTGCAAACTCGTGGAATTTCCATGGCGAAAACGACGTTTTACTCTGGCAATTTGCTTTCTCTGGCAATACTGACGCAAACGCCACATGGATTGCGGTTCTGGGCGCCGATGGATTCATCTCCTTTTACGAGCTTCAAAGTGGTGGGGCTGGAGCTGCTTCGTCCACTAAAATTCCTGAAGATCCTTGTGGTACCCCTGAGCCATGTGGGTCCAATTTCATCTGTTACAGTGAGAACAAGTGCCTCTGTCCTTCAATTCTTGGCTCGCAACCAAATTGCCAGATGGGGATCACTTCGCCATGTGACCAATCGATTGGACCTGCAGAGCTTGTGGAGTCTCAAGATAAGATTGGTTATTTCGCACTCCAATTCATGCAGCCCTCTCTGAAAACGGATTTGGAGAATTGCAAATCCTCTTGTAGAAGTAACTGCTCTTGTATTGCTCTGTTTTTCCAAGAAAGTACCGGGAGTTGTTTCTTGTTCGATCAGATTGGTGGGTTTCAAAACCCCAAGAACTCCGAATTCGTTTCGTACATTAAACTGTTGAAAAATGGAGAAAATGGTGGGAACAATGGTGGAAACGGAAGTGGTGGAAAGAAGCCAATCCCTGCGATTCTGGGAATTGCCTTCGCCACCGTGATTGTCATTTGTGGTTTGATTTACGTCGGAATTCGATTCGTTAGAAAGACGAAGGAATCTCCAGAGCCACCTCAAGAGAGTTCCGAAGAAGAGAATTTCTTGGAGGGTCTCTCCGGAGCTCCAATTCGTTACAGTTACAAAGATCTTCAAACTGCAACCGATAATTTCTCTGTGAAACTCGGACAAGGTGGGTTCGGTTCAGTTTACAAAGGAGTTTTACCCGACGGGACTCGTTTGGCTGTGAAGAAACTAGAGGGGATTGGCCAAGGAAAAAAGGAATTCAGAGCTGAAGTCGGCATAATCGGCAGCATCCATCACATCCATTTGGTCAGACTCAAGGGATTTTGCGCTGAAGGAACCCATCGTCTTCTAGCTTACGAGTTCATGGCCAATGGGTCGCTCGACAAATGGATTTTCAAGAAAAACAGAGCAGATTTCTCGCTAGATTGGGACACGAGATTCAACATAGCCTTAGGAACAGCAAAGGGTTTAGCATATCTCCACGAGGACTGCGATGCCAAAATCGTCCACTGCGATATAAAGCCAGAAAACGTCCTGTTAGACGACAATTTCCAATCCAAAGTCTCAGATTTCGGGCTAGCAAAGCTAATGAACCGCGAGCAGAGTCATGTGTTCACCACACTGCGAGGAACCAGAGGCTATCTCGCTCCAGAATGGATCACAAACTACGCCATTTCAGAGAAGAGCGACGTGTACAGCTACGGAATGGTGCTGCTAGAGATCATCGGCGGAAGAAAAAACTACGACCCAACAGAGAGCTCAGAGAAATCCCATTTCCCGACATACGCTTTCAAGATGATGGAAGAAGGAAGACTGAGGGCCATTCTCGACGCCAAGCTGAACATAAAAGAAAACGACGAGAGGGTGTTCATAGCCATCAAGGTTGCGCTGTGGTGCGTGCAGGAGGATATGCACCAAAGGCCGTCGATGGCGAAAGTGGTGCAAATGCTCGAAGGGGTGAGCGCTGTGACGCAGCCGCCGACGTGCTCGCCGTTGGGTTCTCGGCTGGTTGCAGGCTTTTTGAAGTCGAGCAGCGAGGAGTGGACTTCATCGGGGCCGTCGGATTGCAATAGCGATGCATACCTTTCGTCGGTGCAGCTATCTGGGCCAAGATAG 2463 47.14 MGTSGFGGCLMVIIWLTVLLLRSRPCSAGFQSVGQISPGLRGTQMNWVDRDGVFLLSNNSKFGFGFTNPGVVTEYFLAIIHLGSRKIVWTANQASPVTNSDEFVFDEKGNVILYHESNVVWSTNTTNKGVSALALMDSGNLALLGSDNAVIWESFGHPTDTLLSNQSFVEGMRLVSKPDSNNLTYFLELKSGDMVLSAGFKTPQTYWSMSKENRKTINKDGGSVISATLTANSWNFHGENDVLLWQFAFSGNTDANATWIAVLGADGFISFYELQSGGAGAASSTKIPEDPCGTPEPCGSNFICYSENKCLCPSILGSQPNCQMGITSPCDQSIGPAELVESQDKIGYFALQFMQPSLKTDLENCKSSCRSNCSCIALFFQESTGSCFLFDQIGGFQNPKNSEFVSYIKLLKNGENGGNNGGNGSGGKKPIPAILGIAFATVIVICGLIYVGIRFVRKTKESPEPPQESSEEENFLEGLSGAPIRYSYKDLQTATDNFSVKLGQGGFGSVYKGVLPDGTRLAVKKLEGIGQGKKEFRAEVGIIGSIHHIHLVRLKGFCAEGTHRLLAYEFMANGSLDKWIFKKNRADFSLDWDTRFNIALGTAKGLAYLHEDCDAKIVHCDIKPENVLLDDNFQSKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPTESSEKSHFPTYAFKMMEEGRLRAILDAKLNIKENDERVFIAIKVALWCVQEDMHQRPSMAKVVQMLEGVSAVTQPPTCSPLGSRLVAGFLKSSSEEWTSSGPSDCNSDAYLSSVQLSGPR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36900486 36902948 - Maker00034196 Lcy13g1792 652097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1792 820 CDD B_lectin 51 158 IPR001480 -
Lcy13g1792 820 SMART serkin_6 496 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1792 820 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524(InterPro)
Lcy13g1792 820 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Lcy13g1792 820 Pfam D-mannose binding lectin 87 168 IPR001480 -
Lcy13g1792 820 SUPERFAMILY Protein kinase-like (PK-like) 480 767 IPR011009 -
Lcy13g1792 820 ProSiteProfiles Bulb-type lectin domain profile. 40 156 IPR001480 -
Lcy13g1792 820 FunFam S-receptor-like kinase 5 571 775 - -
Lcy13g1792 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1792 820 Pfam Protein kinase domain 500 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1792 820 PIRSF SRK 9 817 IPR024171 GO:0004674(InterPro)
Lcy13g1792 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 209 IPR036426 -
Lcy13g1792 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 779 IPR051343 -
Lcy13g1792 820 Gene3D Phosphorylase Kinase; domain 1 461 570 - -
Lcy13g1792 820 FunFam serine/threonine-protein kinase PBS1-like 465 570 - -
Lcy13g1792 820 Gene3D - 48 156 IPR036426 -
Lcy13g1792 820 SMART blect_4 46 158 IPR001480 -
Lcy13g1792 820 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1792 820 MobiDBLite consensus disorder prediction 795 820 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1792 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1792 Lcy-Chr13:36900486 Lcy1g2823 Lcy-Chr1:56430690 1.52E-144 dispersed
Lcy2g0761 Lcy-Chr2:6723046 Lcy13g1792 Lcy-Chr13:36900486 4.74E-99 transposed
Lcy6g0113 Lcy-Chr6:1054953 Lcy13g1792 Lcy-Chr13:36900486 4.85E-136 transposed
Lcy12g0590 Lcy-Chr12:7312676 Lcy13g1792 Lcy-Chr13:36900486 5.99E-172 wgd
Lcy13g1792 Lcy-Chr13:36900486 Lcy2g0719 Lcy-Chr2:6343782 7.32E-07 wgd
Lcy13g1792 Lcy-Chr13:36900486 Lcy9g1839 Lcy-Chr9:43471196 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65583 None None None None Lcy PK