Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1798 ATGTTTGCCGCTGAGAATGGTCTGAAGGGAGACCCGAGGCTTCAAGGCATATCTCAAGCCATTAGAGTAGTTCCTCACTTTCCCAAGCCTGGGATAATGTTTCAAGATATTACTACGTTGTTGCTGGATCATAAGGCGTTTAAGGATACTGTCGACATTTTTGTGGATCGTTACAGGGGCATGAACATCTCTGTTGTTGCTGGGGTGGAAGCCAGGGGATTCATGTTTGGCCCTTCAATTGCCTTAGCCATTGGAGCAAAGTTTGTTCCTTTACGAAAACCCAGAAAGCTTCCTGGCGAAGTGATTTCAGAAGCTTATGATTTGGAGTATGGAACAGACTGCTTAGAAATGCAAATTGATGCTGTGAAGCCAGGGGAACGTGCATTGGTTATTGACGATTTGGTTGCCACTGGTGGAACCTTATCGGCAGCAATCAGGCTTCTGGAACGGATGGGTGCTGAAGTGGTTGAATGTGCTTGTGTTGTTGGATTGCGCGAAGTTAAGGTGGACGAAATTGCTTCTGCTTAG 528 46.21 MFAAENGLKGDPRLQGISQAIRVVPHFPKPGIMFQDITTLLLDHKAFKDTVDIFVDRYRGMNISVVAGVEARGFMFGPSIALAIGAKFVPLRKPRKLPGEVISEAYDLEYGTDCLEMQIDAVKPGERALVIDDLVATGGTLSAAIRLLERMGAEVVECACVVGLREVKVDEIASA 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36957562 36961091 + Maker00033826 Lcy13g1798 652103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1798 175 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 7 170 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Lcy13g1798 175 Gene3D - 5 175 IPR029057 -
Lcy13g1798 175 NCBIfam adenine phosphoribosyltransferase 18 169 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Lcy13g1798 175 Hamap Adenine phosphoribosyltransferase [apt]. 17 175 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Lcy13g1798 175 CDD PRTases_typeI 62 174 IPR000836 -
Lcy13g1798 175 FunFam Adenine phosphoribosyltransferase 1 5 174 - -
Lcy13g1798 175 Pfam Phosphoribosyl transferase domain 53 163 IPR000836 -
Lcy13g1798 175 SUPERFAMILY PRTase-like 18 164 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1798 K00759 - - csv:101215432 328.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1798 Lcy-Chr13:36957562 Lcy13g2129 Lcy-Chr13:40188667 3.64E-83 dispersed
Lcy13g1798 Lcy-Chr13:36957562 Lcy12g1805 Lcy-Chr12:39142716 5.73E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g497 . . . . Bpe02g01252 . . . Cmo05g00378 Cmo12g00294 . Cma05g00376 . Car12g00327 Sed01g1380 . . Bhi04g00941 Tan02g2731 Cmetu03g1736 . Hepe10g0243 . Lcy13g1798 . . . . . . . . . Cone17ag1015 Cone20ag0355 . . . Cme03g01606 . Blo18g00019 Bda01g01004 Bda13g01256 Bpe14g00584 . Bma01g01273 . . . . . Cma12g00344 . Car05g00320 . . . . . . . . . Cla08g01342 Cam08g1804 Cec08g1383 Cco08g1511 Clacu08g1498 . Cre08g1285 Lsi08g01213 . Chy03g01111 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy8g1180 . 69 556 PRT Gene Family AT2G16570 84.1 1.2e-241 833.2
Lcy8g1180 . 61 556 PRT Gene Family AT4G34740 83.5 1.4e-242 836.3
Lcy8g1180 . 34 529 PRT Gene Family AT4G38880 70.6 4.8e-197 684.9
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy12g1805 . 6 104 PRT Gene Family AT4G22570 80.8 1.2e-43 172.9
Lcy6g2077 . 1 97 PRT Gene Family AT4G22570 81.6 1.5e-41 166.0
Lcy13g2129 . 102 194 PRT Gene Family AT4G22570 79.6 4.0e-39 157.9
Lcy13g1798 . 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Lcy12g1805 . 1 96 PRT Gene Family AT4G12440 82.3 2.6e-40 161.8
Lcy6g2077 . 1 96 PRT Gene Family AT4G12440 80.2 1.8e-38 155.6
Lcy13g2129 . 98 193 PRT Gene Family AT4G12440 78.1 3.5e-37 151.4
Lcy13g1798 . 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy10g1606 . 1 188 PRT Gene Family AT1G71750 65.8 1.1e-69 260.4
Lcy12g0160 . 19 482 PRT Gene Family AT1G55810 74.6 9.3e-202 700.3
Lcy12g0160 . 80 482 PRT Gene Family AT3G27440 75.7 6.4e-181 630.9
Lcy12g0160 . 1 483 PRT Gene Family AT3G27190 86.4 1.3e-246 849.4
Lcy1g1484 . 12 275 PRT Gene Family AT3G53900 65.9 4.1e-97 352.1
Lcy12g0160 . 10 482 PRT Gene Family AT4G26510 76.1 1.9e-213 739.2
Lcy12g0160 . 1 482 PRT Gene Family AT5G40870 86.3 1.5e-245 845.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139