Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1799 ATGGCTTCCAAATCTCTTTCTTCACCCACCATTCTCTTCTCTCTCCTCCTCTGCTTGGCCCTCGCCGCCGCCGCCCCATGCGACCAGCCCAAAATCAAGCCGGCGCCGGCCAAAAAGAAACCCGCAATCCCCAAAATCATCCGCCCCCCGTCGGTGTCTCCGGCAGTAAAACCGTCTTACTGCCCAAAAGACACCGTGAAGTTCGGCGTCTGTTCCAACATTCTTGGAATTGGCAGCCTGATTGGAAGCCCTGTTTCGAGCAAGTGCTGCGCTTTGCTTAGTGGGTTGACGAATGCCGAGGCCGCCGCTTGTCTTTGCACTGCCATTAAAGCCAATGTTCTTGGAGTTAACTTGGACGTCCCTGTTTCTTTCAGTTTACTCATCAGCTCTTGCAAAAAATCTGTTCCCACTGGCTACCAGTGTGAATGA 429 53.15 MASKSLSSPTILFSLLLCLALAAAAPCDQPKIKPAPAKKKPAIPKIIRPPSVSPAVKPSYCPKDTVKFGVCSNILGIGSLIGSPVSSKCCALLSGLTNAEAAACLCTAIKANVLGVNLDVPVSFSLLISSCKKSVPTGYQCE 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36968465 36968893 - Maker00033792 Lcy13g1799 652104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1799 142 Pfam Hydrophobic seed protein 61 141 IPR027923 -
Lcy13g1799 142 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 64 141 IPR036312 -
Lcy13g1799 142 PANTHER - 10 141 IPR051636 -
Lcy13g1799 142 SMART aai_6 61 141 IPR016140 -
Lcy13g1799 142 CDD HPS_like 58 141 IPR027923 -
Lcy13g1799 142 Gene3D - 60 142 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1799 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0921 Lcy-Chr13:16868829 Lcy13g1799 Lcy-Chr13:36968465 4.94E-29 dispersed
Lcy13g1799 Lcy-Chr13:36968465 Lcy6g2082 Lcy-Chr6:44197103 3.91E-21 dispersed
Lcy13g1799 Lcy-Chr13:36968465 Lcy12g1810 Lcy-Chr12:39249540 2.24E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g576 Blo01g01785 . . Bda03g00445 . Bpe04g00409 . Bma01g02569 Cmo05g00597 Cmo12g00184 Cma01g01455 Cma09g00611 . Car12g00210 . Cpe06g00472 Cpe07g00194 Bhi04g00891 . . . . . Lcy13g1799 . . . . . . . Cone4ag1266 Cone7ag0878 Cone17ag1151 Cone20ag0577 Lsi04g02309 Csa03g04527 Chy04g00175 Cme03g01772 . . . Bda13g01341 . Bpe14g00504 . Bma02g00096 . Cmo01g01507 Cmo09g00599 Cma12g00230 Cma05g00571 Car05g00517 Car09g00542 Cpe11g00500 Cpe02g00496 Bhi09g02546 . . . . . . . . . . . . . . Csa02g02237 Chy03g01278 Cme04g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013776 0 1 0 1 2 1 0 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 0 1 1 1 1 1 1 0 25