Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1800 ATGGAGATTCTTCACCTACCTACAATATCAGCGCTTATCTCTTCCATTTGCCTCGCCTCGACTCTCGTCTTCCTCCTCGTCTCTGAAAATTCCAACGGATTCGCAACCTTCTTATTCTCCGGCTTCAAATTTCCTCCTCCGCTCAAAACGACGCAGTTGCAACACTTCCTTGCAAATTCCGATCGATTCCGAGCCGCTCAGGTGCCGGAAAGCTCCGAGCACTTGGCCGCTCATCGCGTTAACCTAAGGAAAGTGACCAAAACGAAACTGAGCCGAGAAGAAAAGCTCGAGCTAGTGCTCGCTCAAGCTAGGGCTTCGATTCGCAGAGCGGCCAAGGCCCCGCATAACCTATCGACTACCGTCGATGACGTCGATTACGTTCCCTCTTTCTCAGTTTATCATAATCCCCGCGCGTTTTATCAGAGCCACGTGGAGATGGAGAGGAGATTTAAGGTGTACGTGTACCCGGACGGGGAAGTGCCGATCACGCATGACGGGCCATGTAAAAACATATACACGATCGAAGGGAGATTCATACACGAGATGGAGCATGGGGGGAACGGGTTCAGGACGGCGGATCCGGGTCGGGCGCAGGTGTTGTTCATGCCGTTCAGCGTGGCTTGGATGGTGAAGTATTTGTACAAACCGGAAAGCTACGATCAGACGCCGCTGCGGATGTTCGTGAGCGATTACGTGAGGGTGGTGGCGGGGAAGTACCCGTTTTGGAATAAAACCAGTGGGGCTGACCACTTCATGCTTGCATGCCATGATTGGGGTCCAATTGCAACAGAAGGAAACCCCTTCCTCTACAACACATCCATCCGCGTCCTCTGCAACGCCAACTCCTCCGAAGGATTCAACCCACGAAAAGACGTCAGCCTTCCGGAGATCCACCTCTACGACGGCGACATATCGCCCAAGCTCCTGGCGCCGCCGCCGCCGGATTCCCAACGTCCCCACCTAGCATTCTTCGCCGGCGGGCTCCACGGTCCCATCAGACCCATAATCCTAAACCACTGGAAAGACCGCGACAGCGACATCCGTGTGTACGAGTACCTGCCAAAGCAACTGGACTACTACGAGCTGATGCTGGAGTCCAGATTCTGCTTGTGTCCGAGCGGGTACGAGGTGGCAAGCCCCAGAATCGTGGAGGCGATTTACGCGGAATGCGTGCCGGTGATTATATCGGAGCAGTACGTTTTGCCGTTCAGTGACGTGTTGAGATGGGAAGGGTTTTCAATTGAGGTGGGCGTGTCGAAGATTCCGAGGTTGAAGGAGATTCTGATGGGGGTGTCGGAGGAAAAGTACAAGAGGCTTAAGGAAGGTTTGAGGATTGTGCGGAAGCACTTTGTGTTGAACCGCCCGGCTAAGAGGTTCGATGCTTTTCATATGATTTTGCACTCTGTGTGGCTTAGGAGATTGAATGTAAGACTTGCGTAG 1440 53.47 MEILHLPTISALISSICLASTLVFLLVSENSNGFATFLFSGFKFPPPLKTTQLQHFLANSDRFRAAQVPESSEHLAAHRVNLRKVTKTKLSREEKLELVLAQARASIRRAAKAPHNLSTTVDDVDYVPSFSVYHNPRAFYQSHVEMERRFKVYVYPDGEVPITHDGPCKNIYTIEGRFIHEMEHGGNGFRTADPGRAQVLFMPFSVAWMVKYLYKPESYDQTPLRMFVSDYVRVVAGKYPFWNKTSGADHFMLACHDWGPIATEGNPFLYNTSIRVLCNANSSEGFNPRKDVSLPEIHLYDGDISPKLLAPPPPDSQRPHLAFFAGGLHGPIRPIILNHWKDRDSDIRVYEYLPKQLDYYELMLESRFCLCPSGYEVASPRIVEAIYAECVPVIISEQYVLPFSDVLRWEGFSIEVGVSKIPRLKEILMGVSEEKYKRLKEGLRIVRKHFVLNRPAKRFDAFHMILHSVWLRRLNVRLA 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36980388 36984354 - Maker00033902 Lcy13g1800 652105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1800 479 Pfam Exostosin family 147 429 IPR040911 -
Lcy13g1800 479 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 31 473 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1800 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1800 Lcy-Chr13:36980388 Lcy2g0852 Lcy-Chr2:7705303 1.16E-94 dispersed
Lcy11g0801 Lcy-Chr11:23928461 Lcy13g1800 Lcy-Chr13:36980388 1.15E-64 transposed
Lcy12g1845 Lcy-Chr12:39551150 Lcy13g1800 Lcy-Chr13:36980388 1.18E-88 transposed
Lcy1g1289 Lcy-Chr1:12305478 Lcy13g1800 Lcy-Chr13:36980388 7.90E-160 transposed
Lcy3g1615 Lcy-Chr3:43303105 Lcy13g1800 Lcy-Chr13:36980388 2.43E-85 transposed
Lcy6g1096 Lcy-Chr6:12311652 Lcy13g1800 Lcy-Chr13:36980388 5.79E-38 transposed
Lcy9g0345 Lcy-Chr9:9374135 Lcy13g1800 Lcy-Chr13:36980388 3.48E-148 transposed
Lcy13g1800 Lcy-Chr13:36980388 Lcy2g0698 Lcy-Chr2:6119078 5.40E-135 wgd
Lcy13g1800 Lcy-Chr13:36980388 Lcy4g2078 Lcy-Chr4:47320456 3.00E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g503 Blo01g01393 . . . . Bpe02g00556 . . Cmo05g00377 . . Cma05g00375 . . Sed01g1382 . . Bhi04g00016 Tan02g2733 Cmetu03g0444 . Hepe10g0241 . Lcy13g1800 . . . . . . . Cone4ag1775 Cone7ag1691 . . . . . Cme03g01604 . . . . . . . . . . . . . . Car05g00319 Cpe11g00321 . . . . . . . . Cla08g01344 Cam08g1807 Cec08g1386 Cco08g1515 Clacu08g1500 . Cre08g1287 Lsi08g01216 . Chy03g01109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012011 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30