Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1806 ATGGGTTGCGGGAATTTGTTCTTCTTGGTTCTCGTAACCTTCTCCGTCGCTCTAATTACCTACAACATCATCATCTCTGCTAATGCCCCTCTCAAGCAAGAGCTTCCCGGTCCATCAAGATCTTCGTCTTCCATTACTGTGGACCCTGTGATTAAGATGCCGATGTACAGATCAAAACCTTCCTCCTCCAAGCGACTGTTCCACACGGCCGTCACTGCCTCGGATTCGGTCTACAACACTTGGCAGTGTCGGGTCATGTACTACTGGTTCAAGAAGTTCAAGGACGGACCCAATTCTGAGATGGGCGGTTTCACCAGGATCTTGCACTCGGGGAAGCCCGACAAGTACATGGACGAGATTCCCACCTTTGTTGCTCAGCCTCTGCCGGCGGGGATGGATCGGGTACTAATTTCTACGCTGGATTACTCTTGTTTAATTTTCTGTCCTGGTTATTATACCCTCTCTGGCTTTCATTTTCCTGGAACTGAAATTACCTTATATTTGCCGCTCATATTTGGTGTGAAACTGTTACAGGGCTACATAGTCCTCAATAGACCGTGGGCGTTTGTGCAATGGCTTCAACAAGCGGACATCAAGGAAGATTATATACTCATGTCAGAACCGGATCATATTATTGTCAAGCCTATACCAAATTTGTCTAAGGATGGGCTTGGGGCTGCATTTCCGTTCTTTTACATTGAACCGAAGAAGTATGAGCGTCAACTACGGAAGTTCTTCCCTGAGGACAAGGGTCCGATTACCAACATTGATCCAATAGGGAATTCACCGGTTATTGTTGGAAGGGATTCTCTCAAGAAAATTGCTCCCACTTGGATGAACATTTCCTTGGCAATGAAGAAGGATCCTGAAACAGATAAGGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCTGTTGCTTCCGCTCTACATGGTGTTGGTAACATCCTGTATAAGGACTTCATGATTCAGGAAATGAGAAACATTGGCCATTCACTCTCTATAGGTGATGGATATTCTGATTCTCTATCAATTAGCTTATGGGACATTGTTACTTTACAGCCACCGTGGGATAAAGAAGTCGGCAAGAAGTTCATAATTCATTATACTTATGGATGTGACTACAATATGAAGGGAGAACTGACTTACGGGAAGATTGGAGAATGGAGATTTGACAAAAGATCATACGATAACATCGTTCCCCCAAGAAACCTTCCCCTGCCACCACCTGGCGTCCCCGAAAGCGTGGTGACACTTGTGAAAATGGTTAATGAAGCCACAGCAAACATTCCTAACTGGGGATCTTAA 1308 44.88 MGCGNLFFLVLVTFSVALITYNIIISANAPLKQELPGPSRSSSSITVDPVIKMPMYRSKPSSSKRLFHTAVTASDSVYNTWQCRVMYYWFKKFKDGPNSEMGGFTRILHSGKPDKYMDEIPTFVAQPLPAGMDRVLISTLDYSCLIFCPGYYTLSGFHFPGTEITLYLPLIFGVKLLQGYIVLNRPWAFVQWLQQADIKEDYILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYERQLRKFFPEDKGPITNIDPIGNSPVIVGRDSLKKIAPTWMNISLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDFMIQEMRNIGHSLSIGDGYSDSLSISLWDIVTLQPPWDKEVGKKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSYDNIVPPRNLPLPPPGVPESVVTLVKMVNEATANIPNWGS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37027393 37031972 - Maker00034161 Lcy13g1806 652111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1806 435 PANTHER PEPTIDYL SERINE ALPHA-GALACTOSYLTRANSFERASE 5 434 IPR044845 GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1806 K20782 - - csv:101214063 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1806 Lcy-Chr13:37027393 Lcy8g2059 Lcy-Chr8:46812246 2.02E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g542 Blo01g01397 . Bda01g00754 . . . . . . . . . . . Sed01g1388 . . Bhi04g00025 Tan02g2741 Cmetu03g2008 . Hepe10g0236 . Lcy13g1806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .