Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1811 ATGACTTTTCGAAACCAACTCTCTCGGGACCTTCCTCTCCATTACGCGAACCAGCCTCAACAGCAGCAGCCGGAACGGCCACTTTCTGATAACACTCTGCGCTCTATTTTATCTGATCAGCTGACCGACCACTCTCCGGCTGAGGATGGTTCTAAATCCGAGCACCCGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGTGAGACCGCGACGACCGTTGAGGATAACGTCAACACCGATTTCCTTAATCTTCACATGACTGCTTCTAATTCCGTCGTCTCTCACCCGTCCGGTCAATGGCTCTCTCGCCCGATCCTCCATCGCAATCACAGTGATGTTATCGATGAAGTCGCCGATGCTGCAGACGCTATGATTGGCGCCACCGCCTCTTTGTCGCGCGAATCGGATGATTTAAAGAACAGCAGCGGCGGCGAAGGGGACGGTGTGAACAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCTCATGGTGAAGAGGCGGCAGTCAATTGGCAGAATGCGCGGTCTAAGGCTGAAATTCTGGCGCATCCTCTTTACGAGCAGCTGCTCTCTGCGCACGTCGCCTGCCTTCGGATCGCAACGCCGGTGGACCAGTTGCCGCGGATAGATTCTCAGCTTGCTCAGTCTCAGAATGTGACGGTGAAATACTCGTCACTGAGCCACGGTTCTCAGCCCACAGTCGGCAATGGAAAAGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTACTTTGTTCTTTTAAAGAACAGCTCCAGCAACATGTCCGAGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTTTGCAAAGTTTAACAGGAAGTACGGGAATAGCCTTCCACATGTTGAAGATCCAGAGGGAATCTGATGGAAGTCGTAATTCTGTTATCAAGCACCACACAGCGTGTGTACAGACAGTGGAGGCAGCCTGCGTCAGAGACAGGCGAAGTCAACTACTTGTCACTTCTCCACAACAATGGGAAGCTGGATGTTCTACGTGTGTTAGAGAATTATGCAAGACTCTAAAGGAAGCACTTAGATCAATAACGGCATTACGCACGGCCATGAGGTGGCATGGCCCTGCTTGTGTTCGACTTTCGTGCTATGCATGCGCGATGCTAGTTATAGTTGCGTGCCATGCTACTATGTTGACCATGTCACCTCATGGCCATGGGCTGCTGACTTCATATCAATGCCCACTGGTTGCCTTTTGCCCATGCCTTCTTCCCATCAGCGTGTTGATTACGCCCAGCCTCCATGATCCTACATTCTTTTTCCATCCAAGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGATGACGAAGACCAGATAGATAGCGATGTTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACGGAGAGTGAGAGATCCTTGATGGAGAGGGTGAGGCACGAATTAAAGCATGAACTAAAGAATGGTTACAAGGAGAAAATTGTAGACATAAGGGAGGAAATTTTACGAAAAAGGAGAGCAGGTAAGCTTCCTGGTGACACTACATCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCTACTGAGGAAGATAAAGCCAAGTTGGTTCAGGAAACTGGTCTGCAGCTAAAGCAGATAAATAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTGAAGACCAAACGCAAAAGGCAACGACCATCCATAGCGCGAAAAAAACAAATTCGAAGCATTGAAATACAGGCGCCTGGTGCGGAGGAAACTGGCTATTGTCTATTCTGGGGAGAAGCTGCAAGGTTGAGGTGA 1944 48.77 MTFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLTDHSPAEDGSKSEHPLQSTPNWLNSALLRNQTPHSHYSGETATTVEDNVNTDFLNLHMTASNSVVSHPSGQWLSRPILHRNHSDVIDEVADAADAMIGATASLSRESDDLKNSSGGEGDGVNNSDDVAVESDGNEGAHGEEAAVNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAQSQNVTVKYSSLSHGSQPTVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGSTGIAFHMLKIQRESDGSRNSVIKHHTACVQTVEAACVRDRRSQLLVTSPQQWEAGCSTCVRELCKTLKEALRSITALRTAMRWHGPACVRLSCYACAMLVIVACHATMLTMSPHGHGLLTSYQCPLVAFCPCLLPISVLITPSLHDPTFFFHPSVSPGEGTGATMSDDDEDQIDSDVNLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRQRPSIARKKQIRSIEIQAPGAEETGYCLFWGEAARLR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37054816 37059771 - Maker00034080 Lcy13g1811 652116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1811 647 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g1811 647 Gene3D - 534 595 - -
Lcy13g1811 647 SMART ELK_2 513 534 IPR005539 GO:0003677(InterPro)
Lcy13g1811 647 MobiDBLite consensus disorder prediction 1 29 - -
Lcy13g1811 647 MobiDBLite consensus disorder prediction 145 181 - -
Lcy13g1811 647 FunFam homeobox protein knotted-1-like 3 isoform X1 534 595 - -
Lcy13g1811 647 ProSiteProfiles ELK domain profile. 513 533 IPR005539 GO:0003677(InterPro)
Lcy13g1811 647 SMART KNOX1_2 190 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g1811 647 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g1811 647 CDD homeodomain 536 597 IPR001356 GO:0003677(InterPro)
Lcy13g1811 647 Pfam ELK domain 513 534 IPR005539 GO:0003677(InterPro)
Lcy13g1811 647 SMART KNOX2_2 246 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g1811 647 SUPERFAMILY Homeodomain-like 535 599 IPR009057 -
Lcy13g1811 647 Pfam Homeobox KN domain 553 592 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g1811 647 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 189 595 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g1811 647 ProSiteProfiles 'Homeobox' domain profile. 533 596 IPR001356 GO:0003677(InterPro)
Lcy13g1811 647 SMART HOX_1 535 600 IPR001356 GO:0003677(InterPro)
Lcy13g1811 647 MobiDBLite consensus disorder prediction 592 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1811 Lcy-Chr13:37054816 Lcy9g1869 Lcy-Chr9:43718880 3.40E-196 dispersed
Lcy13g1811 Lcy-Chr13:37054816 Lcy2g0672 Lcy-Chr2:5747501 6.76E-20 wgd
Lcy13g1811 Lcy-Chr13:37054816 Lcy9g1867 Lcy-Chr9:43706358 1.11E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19417 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1811 - - - 0.0