Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1813 ATGAAGCTTCTTCTTCATCTCGTTTCTGTCGCCTTTCTTTTCTCTTCTTTTCTTCTTCGATTATGCTCTGTTTTCGTGGGTGCCTCTTCTTTGCCTTCTGCTCCGTTGCCTTCTCCCGTTTCTCCATTTTTGGATTCAATGGCTGCTTCCTCTCCAGGGATTCCGATGGGAATGGAGAGCCTTAGAAGCGACGCCCACAAGAAAATGCTAATTGCCCTCATCGTTTGTGCTTCAATCGGCGCAGTCTTAGTGGCTTCACTGTGTTTGTGGATTTATTGCAGAAGAAACTCGCCAAACTTCCATAAACGAAACGTTCGGAGCTCAGATGCCGAGAAGGGTCTCGTTGGGTTGGCTCCAATTTTGCGTAAATTCAGCTCAAACAAAATGGTGGGTAACAATAAAGTATCTGTTCCACTCATTGATTACGAGGTACTCGAAAAGGCCACCAACATTTTCCAGGAAAGTAACATTCTGGGCGAGGGTGGATTTGGACGGGTTTACAAGGCTCGATTGGAAGATAACTTACACGTTGCTGTGAAGAAACTAGAATGTAGCGATAAGGAGTCAGAGAAAGAATTCGAGAATGAAGTCGATCTATTGAGCAAAATTCAGCATTCAAACATCATCCGGCTACTGGGTTACACCATTCATGGGGAATCAAGGCTTATTGTGTACGAGTTAATGGAAAACGGATCACTGGAAACACTGTTACATGGGCCTTCACATGGAGAGGCATTAACATGGCACATGCGCATGAAGATTGCTCTAGATTCAGCTAGAGGATTAGAATATCTGCATGAGCACTGCAAGCCTGCAGTCATACATAGAGATCTGAAATCGTCCAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTTTCCGATTTTGGCCTGTCTGTAATTGTTGGAGCACAAAACAAGAACGATATAAAGCTTTCTGGGACGATGGGTTATGTTGCTCCAGAATATCTTTTAGATGGTAAATTGACTGATAAGAGTGATGTCTATGCCTTTGGTGTTGTGCTTTTGGAGCTTCTTTTAGGAAGAAGGCCTGTTGAAAAACTGGCACCATCTCAATGTCAATCCATTGTCACATGGGCTATGCCTCAGCTCACTGATAGATCAAAGTTGCCTGATATCGTTGACCCGGTGATTAGAAACACAATGGATCCGAAGCACTTATTTCAGGTTGCTGCTGTCGCCGTGCTATGCGTGCAACCCGAACCGAGCTATCGCCCCCTAATAACGGATGTTTTGCACTCTCTTATTCCTCTTGTTCCCGTTGAGCTTGGAGGGACGCTCAGATCACCAACACAACAAGTTCCTGTGGCTCCAGCTTAG 1341 44.59 MKLLLHLVSVAFLFSSFLLRLCSVFVGASSLPSAPLPSPVSPFLDSMAASSPGIPMGMESLRSDAHKKMLIALIVCASIGAVLVASLCLWIYCRRNSPNFHKRNVRSSDAEKGLVGLAPILRKFSSNKMVGNNKVSVPLIDYEVLEKATNIFQESNILGEGGFGRVYKARLEDNLHVAVKKLECSDKESEKEFENEVDLLSKIQHSNIIRLLGYTIHGESRLIVYELMENGSLETLLHGPSHGEALTWHMRMKIALDSARGLEYLHEHCKPAVIHRDLKSSNILLDANFNAKLSDFGLSVIVGAQNKNDIKLSGTMGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRRPVEKLAPSQCQSIVTWAMPQLTDRSKLPDIVDPVIRNTMDPKHLFQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRSPTQQVPVAPA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37095310 37099355 + Maker00033998 Lcy13g1813 652118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1813 446 SUPERFAMILY Protein kinase-like (PK-like) 131 422 IPR011009 -
Lcy13g1813 446 CDD STKc_IRAK 158 425 - -
Lcy13g1813 446 SMART serkin_6 152 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1813 446 ProSiteProfiles Protein kinase domain profile. 152 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g1813 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g1813 446 Gene3D Transferase(Phosphotransferase) domain 1 228 427 - -
Lcy13g1813 446 FunFam probable receptor-like protein kinase At1g80640 228 427 - -
Lcy13g1813 446 Gene3D Phosphorylase Kinase; domain 1 118 227 - -
Lcy13g1813 446 FunFam Protein kinase superfamily protein 118 227 - -
Lcy13g1813 446 PANTHER OS01G0750732 PROTEIN 53 426 IPR050885 -
Lcy13g1813 446 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524(InterPro)
Lcy13g1813 446 Pfam Protein tyrosine and serine/threonine kinase 155 389 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1813 Lcy-Chr13:37095310 Lcy3g2004 Lcy-Chr3:47155211 6.50E-169 dispersed
Lcy13g1813 Lcy-Chr13:37095310 Lcy4g0696 Lcy-Chr4:8389341 2.88E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65584 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1813 - - - 0.0