Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1814 ATGGCGTCCTCTATCCTCCCTCTCGCTTCTGCGTCCCCATCAGCTTCACTTTCCTCTCTTGAGAACAAGAAGCAGGGGAAGTTGAACCTTGGAAGTAACTGCCTGAGTTTTGATCGAGAGAAAAACCATCCGTTCGCGAAGGCCAAGGGAAGTGAAAGGCGGATTGATTCAGTACTATTTTTTGATTTTCAGTCCTTCAGCAGGATATCAATGGTTGCCTCAGTTAATGTCTCTCGGTTTGAGGGGATAACAATGGCCCCTCCTGATCCAATTCTTGGAGTATCTGAGGCCTTCAAGGCAGATACGCATGGAAACAAGCTCAACTTGGGAGTTGGCGCATACCGCACAGAAGAGCTACAGCCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGAAACTTATGCTGGAGAGGGGAGATAACAAAGAGTATCTCCCAATTGAAGGTCTGGCAGCATTCAATAAGGCCACTGCAGAATTATTATTTGGAGCCGATAACCCAGTCATCAAGCAGCAACGTGTTGCAACTATTCAAGGTCTCTCAGGGACTGGTTCTCTTAGAATAGCTGCAGCACTTATTGAACGATACTTTCCTGGTGCAAAAGTCCTTATATCTTCTCCAACTTGGGGGAATCATAAAAATATCTTCAATGATGCAAGAGTTCCATGGTCTGAGTATCGATATTACGATCCAAAAACAGTTGGTTTGGATTTTGACGGGATGATATCTGATATTAAGGCAGCACCTGAAGGATCTTTTGTGTTGCTTCATGGTTGTGCTCACAACCCGACTGGCATTGACCCAACACCTGAGCAATGGGAAAAAATTGCTGATGTAATTCAGGAAAAGAACCACATTCCATTTTTTGATGTTGCATATCAGGGATTTGCTAGTGGAAGCCTTGATGCAGATGCAGCATCTGTTAGGCTGTTTGCTGCTCGTGGTTTGGAGCTTCTGGTTGCTCAATCATATAGTAAAAATCTTGGTCTTTATGCTGAAAGAATTGGGGCTATCAACGTTATCTGCTCATCAGCAGATGCAGCAGCAAGAGTTAAGAGCCAGCTAAAGAGGCTTGCTCGACCAATGTACTCAAATCCTCCGGTTCATGGAGCTAGAATTGTTGCTAATATTGTTGGAGAACCAGCACTATTTGACGAGTGGAAAGCAGAAATGGAAATGATGGCTGGAAGGATAAAGAATGTTAGACAGAAGCTCTATGATAGTCTCTGTGCGAAAGATAAAAGTGGGAAAGATTGGTCCTTTATACTCAAGCAGATTGGCATGTTCTCATTCACAGGCTTAAGCAAAGTTCAGAGTGATAATATGACGGACAAGTGGCATGTTTACATGACGAAGGATGGACGGATATCTTTGGCTGGATTATCGTTAGCTAAATGTGAATATCTCGCAGATGCCATCATTGATTCATTCCACAACGTACGGTAA 1443 43.52 MASSILPLASASPSASLSSLENKKQGKLNLGSNCLSFDREKNHPFAKAKGSERRIDSVLFFDFQSFSRISMVASVNVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVEKLMLERGDNKEYLPIEGLAAFNKATAELLFGADNPVIKQQRVATIQGLSGTGSLRIAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARGLELLVAQSYSKNLGLYAERIGAINVICSSADAAARVKSQLKRLARPMYSNPPVHGARIVANIVGEPALFDEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37101041 37105043 - Maker00034236 Lcy13g1814 652119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1814 480 Gene3D - 138 379 IPR015421 -
Lcy13g1814 480 FunFam Aspartate aminotransferase 138 379 - -
Lcy13g1814 480 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 322 335 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Lcy13g1814 480 SUPERFAMILY PLP-dependent transferases 78 474 IPR015424 -
Lcy13g1814 480 CDD AAT_like 107 472 - -
Lcy13g1814 480 PRINTS Aspartate aminotransferase signature 284 296 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Lcy13g1814 480 PRINTS Aspartate aminotransferase signature 253 272 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Lcy13g1814 480 PRINTS Aspartate aminotransferase signature 352 377 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Lcy13g1814 480 PRINTS Aspartate aminotransferase signature 421 439 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Lcy13g1814 480 PANTHER ASPARTATE AMINOTRANSFERASE 64 479 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Lcy13g1814 480 FunFam Aspartate aminotransferase 365 472 - -
Lcy13g1814 480 Pfam Aminotransferase class I and II 105 472 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Lcy13g1814 480 Gene3D Aspartate Aminotransferase, domain 1 83 472 IPR015422 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1814 K00811 - - csv:101213342 856.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1814 Lcy-Chr13:37101041 Lcy9g1736 Lcy-Chr9:42551058 2.57E-145 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .