Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1816 ATGCCCAGACCACAACAAAGATACCGCGGCGTCCGACAGCGCCACTGGGGCTCTTGGGTCTCCGAAATCCGCCATCCCTTATTGAAGACTAGAATTTGGCTAGGCACCTTCGAGACGGCGGAGGATGCTGCGCGGGCATACGACGAAGCTGCGAGGCTGATGTGCGGACCGAGGGCGCGTACGAATTTCCCTTACGACGCCTCCCTATCTCGCTCCTCCTCTTCCCGCCTTCTCTCGGCCACTTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCGCTGCAGCTGACCAAGCAATCCTCTCCCGCCGTGCGTCGCGCTCAAACCGACCCAATCCGAACCGATTTCGTTATGGCTTCCAGCATTGCCCCGACCGAGCGAGTCGAAGCGGAAGCGACGGTGAAGAAAGTGAAACTGGAGAGTGAGGATTGTGGGGAGCCGTTGATGATTGAGATGCTGGATGATGATCATATACAGCAGATGATCGAGGAGCTGCTTGATTACGGCGGAATTGAGCTCCGGTCGGCCTCCGTCGTGCAGCCTCAGGCCATTTGA 555 58.38 MPRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSPAVRRAQTDPIRTDFVMASSIAPTERVEAEATVKKVKLESEDCGEPLMIEMLDDDHIQQMIEELLDYGGIELRSASVVQPQAI 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37121738 37123134 + Maker00034137 Lcy13g1816 652121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1816 184 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1816 184 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1816 184 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1816 184 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1816 184 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Lcy13g1816 184 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lcy13g1816 184 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1816 184 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1816 184 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 122 IPR050913 -
Lcy13g1816 184 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1816 Lcy-Chr13:37121738 Lcy3g2003 Lcy-Chr3:47149230 3.76E-50 dispersed
Lcy13g1816 Lcy-Chr13:37121738 Lcy13g1817 Lcy-Chr13:37127558 4.40E-69 tandem
Lcy12g0538 Lcy-Chr12:6576075 Lcy13g1816 Lcy-Chr13:37121738 1.95E-46 wgd
Lcy13g1816 Lcy-Chr13:37121738 Lcy9g1874 Lcy-Chr9:43776258 5.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19418 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1816 - - - 0.0