Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1817 ATGGCCAGACCTCAACAGCGTTATCGAGGCGTCCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAAACCAGAATTTGGCTGGGCACTTTCGAAACGGCGGAGGATGCTGCAAGAGCCTACGACGAAGCCGCTCGGTTAATGTGTGGCCCTAGAGCACGAACCAATTTCCCTTTCAACGCCAACGACTCCAATTCCTCTTCTTCTAAACTTCTCTCTGCCAATTTGACCGCCAAGCTCCACCGTTGCTACATGGCGTCTCTCCATTTGACCAACCCATCGCCGCAGAAACCCGCCGCGCCCGGGAATAAGCCCCTGACGGCGGAGAAGAAAAGGGCGGCGGCGGCGGCGACGACGGAGGCCCAAACGCAGACTGCCCATCAGCCGTTTGAGGCTCTGGAAGAGGATCACATCCAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTGTGGTGCCGCCGTCTCAGGCCTTTTGA 510 55.1 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSANLTAKLHRCYMASLHLTNPSPQKPAAPGNKPLTAEKKRAAAAATTEAQTQTAHQPFEALEEDHIQQMIEELIHYGSVELCSVVPPSQAF 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37127558 37128416 + Maker00033941 Lcy13g1817 652122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1817 169 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Lcy13g1817 169 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Lcy13g1817 169 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g1817 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 130 IPR050913 -
Lcy13g1817 169 MobiDBLite consensus disorder prediction 96 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0538 Lcy-Chr12:6576075 Lcy13g1817 Lcy-Chr13:37127558 7.10E-46 dispersed
Lcy13g1817 Lcy-Chr13:37127558 Lcy3g2003 Lcy-Chr3:47149230 4.72E-52 dispersed
Lcy13g1816 Lcy-Chr13:37121738 Lcy13g1817 Lcy-Chr13:37127558 4.40E-69 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19419 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1817 - - - 0.0