Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1820 ATGGAGTCCTCATTTACCGAGACCCCTCCACCTCCAAAAACGCCGTCGCAAAACCCAGAACAGTACAAAGACGACAAATTAGAGAAGGGTTTTGCCGAGGAAGACGACGGCGACCACCATCTCCGCCGTGGGATTCCGGCGGAGGAGCTGAATCTTATTGAGGGTTTGAAAATGGGTTCGTCGGAGCCTAGGGTTTTTTCGTGTAATTTCTGTCAGAGGAAATTTTATAGCTCTCAAGCACTTGGAGGCCATCAAAATGCTCATAAAAGAGAGAGAACGTTGGCCAAAAGAGGCGGTCAACGGCTGCCGGCGTTCGGTGGCTACCACCACTATGCGGCGGCGGCGGCGGCGCAGTCTTTTCCATTTCGCGGTGGTCCCAACAGGTCGCTTGGAATTCAGGTTCACGCGATGGTCCATAAGCCGTTTCACCACGCGCCGGTTTCTTCTTCGGGGTTTGGGATCCCGTACGGCCGTTCCCACGGTTGGTCCAGAATTCCGATCCATCAACAGCCCGGGATCGGGAAGCTGCCGCTGATCAACGCTGGCCATGAGATTAATCAAACACCTGATTTTGCGCCACGTAGCTGTAGCAGCGTAGGTAGGTTCGACTTCGACGTGGTCCGATCAACGGCGGCAGGTACGGCGGCGGCTGCCGGCGTTCTTTTCAACAATAAACAAGAGGAGACCCACAAAGTACTAGACTTGTCTCTCAAGTTGTAA 720 54.03 MESSFTETPPPPKTPSQNPEQYKDDKLEKGFAEEDDGDHHLRRGIPAEELNLIEGLKMGSSEPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRLPAFGGYHHYAAAAAAQSFPFRGGPNRSLGIQVHAMVHKPFHHAPVSSSGFGIPYGRSHGWSRIPIHQQPGIGKLPLINAGHEINQTPDFAPRSCSSVGRFDFDVVRSTAAGTAAAAGVLFNNKQEETHKVLDLSLKL 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37165673 37166392 - Maker00033950 Lcy13g1820 652125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1820 239 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lcy13g1820 239 SUPERFAMILY beta-beta-alpha zinc fingers 63 93 IPR036236 -
Lcy13g1820 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Lcy13g1820 239 Gene3D Classic Zinc Finger 50 112 - -
Lcy13g1820 239 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 58 239 IPR044246 GO:0009788(InterPro)
Lcy13g1820 239 MobiDBLite consensus disorder prediction 1 41 - -
Lcy13g1820 239 MobiDBLite consensus disorder prediction 19 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1820 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1820 Lcy-Chr13:37165673 Lcy3g2000 Lcy-Chr3:47121354 1.55E-26 dispersed
Lcy12g0533 Lcy-Chr12:6518986 Lcy13g1820 Lcy-Chr13:37165673 1.57E-37 wgd
Lcy13g1820 Lcy-Chr13:37165673 Lcy9g1878 Lcy-Chr9:43804500 4.56E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g525 . . Bda01g00760 . . Bpe02g00545 . . . . . . . . Sed11g1150 . . Bhi04g00040 Tan02g2755 Cmetu03g0839 . Hepe10g0223 . Lcy13g1820 . . . . . . . . . . . . . . . . . . . . . . . Sed06g2059 . . . . . . . . Bhi09g02982 Tan01g3585 Cmetu07g2142 . Hepe01g1980 Mch11g0516 . . . . . . . . . . . Cme07g00107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013564 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 26