Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1825 ATGTCGATTTTACCGAAGGGCGATTCGATTCAAATCCGTGAGGTGTGGAACGCGAATTTGGAGGAGGAGTTTGCGCTTATCCGGGAAATTGTTGATGAATTTAATTACATAGCGATGGATACCGAGTTCCCCGGAGTGGTGCTTCGTCCGCTTGGTGCTTTTAAGAATATCAACGATTACAACTACCAGACTCTCAAAGATAATGTTGATATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGATGAGAAGGGAAATCTCCCGACTTGTGGAACGGATAAGTTTTTTATTTGGCAGTTTAATTTCCGCGAGTTCAACATTAGTGAAGATGTTTTTGCCAGTGATTCGATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTAAGAAGAACAATGAAGAGGGTATCGATGTCAATCGATTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGATGGTGTTAACTGGGTGACATTCCACAGTGGATATGATTTTGGTTACTTGCTGAAATTGCTGACTTGCCGAAGCTTACCAGAATCGCAGGCGGGATTTTTTGATTTGATCAACATCTATTTTCCTGTGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGTCTCCATGGTGGATTGAACAAGCTTGCGGAGTTATTAGATGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTGTACTTTTAGGAAGTTAAGGGATACTTTTTTCAATGGATCTACACAGAAATACGCAGTAAAGCACTTGTTATCTTTCTCTTCCTATAGAACATTTGCAGAACTCTGCCCATACGTCTGTTTTGAGATGGCTAAAGTTTCAACTGCTGGTATGGTTGCAGAGTTCAGAGGCGTATCTTTGGCTCAGAACATCAGAACGGAATGCAAGAGCCGTGGAGATTTTACACCCCTGTTAATTTTTCTTCAGACAGAGCCTGGAAAGGAAACCAAGAAGAAGATTTCAAACTTGGGAATTTGGGAAGCTAGTTGA 1029 41.3 MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDEKGNLPTCGTDKFFIWQFNFREFNISEDVFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRSLPESQAGFFDLINIYFPVVYDIKHLMKFCNSLHGGLNKLAELLDVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTQKYAVKHLLSFSSYRTFAELCPYVCFEMAKVSTAGMVAEFRGVSLAQNIRTECKSRGDFTPLLIFLQTEPGKETKKKISNLGIWEAS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37189891 37192101 - Maker00034243 Lcy13g1825 652130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1825 342 Gene3D - 2 267 IPR036397 GO:0003676(InterPro)
Lcy13g1825 342 SUPERFAMILY Ribonuclease H-like 12 260 IPR012337 -
Lcy13g1825 342 FunFam Putative CCR4-associated factor 1 7 2 266 - -
Lcy13g1825 342 Pfam CAF1 family ribonuclease 159 243 IPR006941 -
Lcy13g1825 342 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 259 IPR039637 GO:0000932(PANTHER)|GO:0004535(PANTHER)|GO:0004535(InterPro)|GO:0030014(InterPro)|GO:0030015(PANTHER)|GO:0043928(PANTHER)
Lcy13g1825 342 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1825 K12581 - - rcu:8278619 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1825 Lcy-Chr13:37189891 Lcy5g1279 Lcy-Chr5:30233743 5.02E-92 dispersed
Lcy13g1822 Lcy-Chr13:37174810 Lcy13g1825 Lcy-Chr13:37189891 3.76E-179 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g517 . . . . . . . . . . . . . . . . . Bhi04g00042 Tan02g2757 . . . . Lcy13g1825 . . . . . . . . . . . . . . . . Blo18g00012 . Bda13g01246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .