Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1826 ATGGCCAAGTGTCATTCTAGCAGCGTTGGATCGGTGGCAGTCGACGCTATCGCCGGCGCCAATGCAGCTACTCGACACTTCCGATTCTGTACGGCTTTTTCCGGAGCTGCATTCCGTCGCAGAATCTACGACGCTGTAAGTTGCGGTGGCAGTTCTCGGTACCGCCACCGCTACAAGGACGAGACGATGGATGATGAGCCGAGGGCGGGGAACAGATCGGCTTCGGCTTCTACGGATTTGAAGGAGGAGGAGCGGCCGAGGAATCAGAAGTTGCCCAATGGAAGATCGGAGAAGCTCGTGGATCTTCTGAATTTGGCGGAGTCGGTGGAGCCGGAGAATGAGGCGGAGACGAGGAAGAAGGAGGAAGCGTTGGAGGAGTTGAAACGTACGGTGAAGGATTTGCAGGTTGAGGATTTGGTGAGGCGAAAAGCGGCGGCGAGCCATGTCAGGCTTATGGCGAAGGAGGATTTGGTTATACGAGGGACGCTTGCTCTTCTCGGCGCCATTCCACCTCTCGTCGCGATGCTTGATTTGGAAGATGAACAATCTCAGATCGCTGCGCTCTATGCATTGCTAAACCTTGGAATCGGCAATAATGCGAACAAGGCAGCAATTGTGAAAGTGGGGGTCATCCACAAAATGTTAAAGCTCATTAAATCAGAGAGTGCGTCAAACTCATCGGTTACAGAGGCAATAATTGCAAACTTCCTCGGCTTGAGCGCACTGGACTCGAACAAGCCGGTAATTGGATCGTCTGGTGCGATTCCCTTCTTGGTCAAATCTCTACAAAACACTGATCGTAAAATTAGCAATCAGGCCCGGCAGGATGCTCTAAGGGCGCTCTTCAATCTGTCAATTGCGGCATCAAATGTCTCGATCATATTAGAAACAGATTTAATCCCATTTCTTCTTAACATGTTGGGAGACATGGAAGTGAGTGAAAGGATCCTTTCAATTTTAAGCAACGTGGTATCAACCCCAGAAGGTAGAAGAGCAATCAGCATCGTTCCAGATGCATTCCCAATACTGGTTGATGTTTTAAACTGGACAGATTCACCTGGCTGCCAAGAAAAGGCGTCCTACGTTTTAATGGTGATGGCACACAAGCTCTATGGTGAGAGACAGACAATGGTAGAAGCAGGCCTTGTATCTGCTTCTCTTGAATTAACTCTCTTGGGTAGTGCATTAGCTCAGAAGAGGGCATCCAGAATTTTGGAGTGCTTGAGATATGATAAAGGCAAGCAAGTTTCTGAAAGTTTTGGTGGGAATCTGAGTGCAGCAGTGTCTGCTCCCATTATCGGGACTTCATCTTCTTCAAATTGTAATTTAGATTCCAAAGTCTGCATGGAAGAATCTGAAGAGGCCATGAGCGTGGAGAAAAAAGCAGTGAAGCAATTAGTTCAACAGAGTCTGCAGTACAACATGAGGAAAATTGTGAAGAGGGCCAATTTGCCTCAAGATTTTGTTCCTTCAGAGCACTTTAAGTCGCTCACAGCAAGTTCAACTTCTAAAAGCCTACCGTTTTAA 1527 47.87 MAKCHSSSVGSVAVDAIAGANAATRHFRFCTAFSGAAFRRRIYDAVSCGGSSRYRHRYKDETMDDEPRAGNRSASASTDLKEEERPRNQKLPNGRSEKLVDLLNLAESVEPENEAETRKKEEALEELKRTVKDLQVEDLVRRKAAASHVRLMAKEDLVIRGTLALLGAIPPLVAMLDLEDEQSQIAALYALLNLGIGNNANKAAIVKVGVIHKMLKLIKSESASNSSVTEAIIANFLGLSALDSNKPVIGSSGAIPFLVKSLQNTDRKISNQARQDALRALFNLSIAASNVSIILETDLIPFLLNMLGDMEVSERILSILSNVVSTPEGRRAISIVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKLYGERQTMVEAGLVSASLELTLLGSALAQKRASRILECLRYDKGKQVSESFGGNLSAAVSAPIIGTSSSSNCNLDSKVCMEESEEAMSVEKKAVKQLVQQSLQYNMRKIVKRANLPQDFVPSEHFKSLTASSTSKSLPF 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37213120 37216501 + Maker00034175 Lcy13g1826 652131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1826 508 SMART arm_5 242 286 IPR000225 GO:0005515(InterPro)
Lcy13g1826 508 SMART arm_5 287 325 IPR000225 GO:0005515(InterPro)
Lcy13g1826 508 SMART arm_5 155 196 IPR000225 GO:0005515(InterPro)
Lcy13g1826 508 SMART arm_5 198 241 IPR000225 GO:0005515(InterPro)
Lcy13g1826 508 MobiDBLite consensus disorder prediction 59 96 - -
Lcy13g1826 508 Coils Coil 113 137 - -
Lcy13g1826 508 SUPERFAMILY ARM repeat 131 409 IPR016024 -
Lcy13g1826 508 Gene3D - 271 418 IPR011989 -
Lcy13g1826 508 Coils Coil 449 469 - -
Lcy13g1826 508 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 508 - -
Lcy13g1826 508 Gene3D - 124 270 IPR011989 -
Lcy13g1826 508 MobiDBLite consensus disorder prediction 77 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1826 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1826 Lcy-Chr13:37213120 Lcy5g1838 Lcy-Chr5:41198804 1.21E-34 dispersed
Lcy13g1826 Lcy-Chr13:37213120 Lcy9g1883 Lcy-Chr9:43866954 6.73E-209 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112