Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1828 ATGGCCTCTTCCGACAAGGATGTCGAAGAACAGCTTCTGGAAGCTGGCAATAAGATTCTTGAACCCCCTACTTCAGTTGAAGAGCTTCTACCTCTTCTCGACAAAATTGAGAGTTTGCTGGCAAGGGTTGAACAATCCCCTTCAAAATCAATGCAAAGTGCGCTCACTCCATCTTTGAAAGCATTGGTTTCTGATCAGCTTCTTAGGCATTTGGACACTGATGTCAAAGTTGCAGTTGCTGCATGCATTAGTGAAATAACTAGGATCACTGCACCTGATGCCCCTTACAGTGATGAGCAAATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTATCTGACAAGTCAAGTCGTTCATATGCAAAGAGGGCATCCATTCTTGAAACCGTTGCAAAGGTCAGATCGTGTGTGGTCATGCTGGATTTGGAATGTGATGGATTGATCATTGAGATGTTCCAACATTTCCTTAAGACAGTAAGAGATTATCACCCAGAGAATGTATTTTCGTCAATGGAAACAATTATGAGCCTTGTTCTAGAAGAAAGTGAAGATATATCTGTAGAGCTCCTCTCTCCTATCTTAGATAGTGTGAAGAAGGACAATGAGGAAATTTTACCCATTGCTCGGAAATTAGGAGAAAGAGTTCTTGATAACTGTTCTACGAAGCTCAAACCTTATTTGATTCAAGCTGTAAAAACCTTGGGAATTTCTTTTGATGATTATAGTGATGTTGTTGCTTCCATATGCAAAGATCTTTCTGACTCTCTTGAGCCAAGTAATCTTCATGATGCTGGTGAAAACGTGGTTGCTGAGAGCAAGTCAGTTAGAACGTCTGGGGATGAGGTTGAAGAGAAACCCACAGAAGTGGCCACGCCTGAGAGAGTTGATACGGCCATTGAGAAACATCATGACTCAGTTAAGAGCAATGGGGTTGCTCAGGGGGGTGAAGAGGGCTCTGTCTCTAATTTGGAGAACAAGAAGGAAGATCATGATGGTCAGGAGTGCAAAGAGGTGAAATCACCCAAAAGTTCTGAGCCTGATAATTTGAGCTCTCAGAAGGCTAGCAGTGTGAAGGAAAGATCTGAAAAGACCTCCAGGAAAAGAGGTAGAAAATCTAATCAATCCTCGAAATCTACCGAAGTTCCACATGTTGATGCCCAGAAGGGATCTGATAATCAGCCAGAGCATGAAAGCCATAGCGAACGCCCTGGTTCTCCTCCTGGGGACCGGTCTGCTGAAAAATTGCCTTCAGAAAATGAAGTTGATGCCAAGCCTTCTTCACCCAAGGCTATGGAGATTGAATCTGCAAATGTTGCTTCACCTTCACTCAGTGGAAGTGTTCCTGATGAATGTAACAATAAGTCAGGACAGGGCAATAAGGCTGGACAGGCAAAAAAGAAAGGCAACTCAGCTAAAGAGGTGGCATTATCTGCAGAAGTTTCAAAAAAATCATCTGAAGGAATGAATGACTCAGGAGCAAAGCTTGATTCACATGCTGAAGAGAAGGCTCCAGCTGGGGTTTCTGATGATATTAAAACTGCAGCTGAGGATGCAGCAGAAAGGGAAAGTGACACTACCAGTGATTCTGAGGCTAAGACATTGAAGCAGCCTGCTAGGAAGGGGGATGGAGCCAGTAAGAGTGCTGGTGGATCTTTAAAACAATTGGAGGCTAAGAAAAAGAAGGGATCAGGGAAATCTAGTTCTGGAAAAACTGTGAAAAATTTGTCAGGCGATGATGATAAAAAGGAGACAACACCTGTGCTGAAATCAACCTCGAAAACAATCAAAGATGAGAAGATCTTGGACAAGACTACAACACCGGCTTCCAAGAGGAAACGAACTCCTAGCAAAGAAAAAGAGTCTGAAACCAAGGATTTTGATGAAAATTTGGTTGGTTCGAAGATAAAAGTGTGGTGGCCAAAAGATCGCATAGAACAGCAGCCCTTGAACTCTGCAGACTGTTTTATGATGGTGTTGTTGATTCTTTTGATCCTGAAAAAAGGAAGCACAAGGTATCGTTTATGGAATCCTAGGTTTTTTTGGTTATTATGA 2061 42.36 MASSDKDVEEQLLEAGNKILEPPTSVEELLPLLDKIESLLARVEQSPSKSMQSALTPSLKALVSDQLLRHLDTDVKVAVAACISEITRITAPDAPYSDEQMKEVFHLIVSSFENLSDKSSRSYAKRASILETVAKVRSCVVMLDLECDGLIIEMFQHFLKTVRDYHPENVFSSMETIMSLVLEESEDISVELLSPILDSVKKDNEEILPIARKLGERVLDNCSTKLKPYLIQAVKTLGISFDDYSDVVASICKDLSDSLEPSNLHDAGENVVAESKSVRTSGDEVEEKPTEVATPERVDTAIEKHHDSVKSNGVAQGGEEGSVSNLENKKEDHDGQECKEVKSPKSSEPDNLSSQKASSVKERSEKTSRKRGRKSNQSSKSTEVPHVDAQKGSDNQPEHESHSERPGSPPGDRSAEKLPSENEVDAKPSSPKAMEIESANVASPSLSGSVPDECNNKSGQGNKAGQAKKKGNSAKEVALSAEVSKKSSEGMNDSGAKLDSHAEEKAPAGVSDDIKTAAEDAAERESDTTSDSEAKTLKQPARKGDGASKSAGGSLKQLEAKKKKGSGKSSSGKTVKNLSGDDDKKETTPVLKSTSKTIKDEKILDKTTTPASKRKRTPSKEKESETKDFDENLVGSKIKVWWPKDRIEQQPLNSADCFMMVLLILLILKKGSTRYRLWNPRFFWLL 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37231019 37243262 + Maker00034072 Lcy13g1828 652133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1828 686 MobiDBLite consensus disorder prediction 324 346 - -
Lcy13g1828 686 MobiDBLite consensus disorder prediction 496 542 - -
Lcy13g1828 686 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 1 280 IPR039776 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006281(PANTHER)|GO:0007064(InterPro)|GO:0007064(PANTHER)
Lcy13g1828 686 MobiDBLite consensus disorder prediction 262 628 - -
Lcy13g1828 686 MobiDBLite consensus disorder prediction 440 467 - -
Lcy13g1828 686 Pfam Sister chromatid cohesion protein PDS5 protein 27 232 - -
Lcy13g1828 686 MobiDBLite consensus disorder prediction 392 423 - -
Lcy13g1828 686 MobiDBLite consensus disorder prediction 279 310 - -
Lcy13g1828 686 MobiDBLite consensus disorder prediction 577 628 - -
Lcy13g1828 686 SUPERFAMILY ARM repeat 26 263 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1828 Lcy-Chr13:37231019 Lcy3g1997 Lcy-Chr3:47103050 1.61E-91 dispersed
Lcy13g1827 Lcy-Chr13:37225397 Lcy13g1828 Lcy-Chr13:37231019 1.13E-136 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g511 . . . . . . . . . . . . . . Sed01g1394 . . Bhi04g00044 Tan02g2759 Cmetu12g0413 . Hepe10g0220 . Lcy13g1828 . . . . . . . . . . . . . . . . Blo18g00010 . Bda13g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54