Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1830 ATGGAACCTTCATCAACCATCAATACGTGTCTCGACCTCAATTTCAATCCTCCGCCGTACACCGCCGACGAATCTCCGGCCACTAACACTGTTACTCAACTCAAAGAAGAGGCTCCGGCCGTTCTTGCCGAAAAGTTGAATCGGATGAGTTCGGAGAATCAGAAGCTGAATCAGATGCTAGGCCTCGTCGTTGACAGTTACAACGTTCTGAAAGATCAGGTGATCGATTTGATGATTAAATCGAGGAAGCGAAAGGCAGGATGCGATGATTGCAACTTCAATCGGAGCGGATCTGGCGCTAATGCTTTTACCGATCAGTACTGCGGCTGCTGTAGCGACGACGATTCGTGTCATAAAAGGCCGAGAGAAAGCAGTAAGCCGAAGGTTATGAGAGTTTTGGTTCCGACGCCGATTTCCGATGCGAGCCTGGTTGTGAAGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTCACTAAAGACAACCCGTCGCCTAGAGCTTACTATAAATGCTCCTTTGCCCCAAGCTGCCCGGTGAAAAAGAAGGTGCAAAGAAGTGCTCAAGACCCATCCTATTTAGTGGCTACATACGAAGGGGAGCACAATCACATGAAACCTAATTCTGGAATTGAGTATCAATTAGTTGGACCAATTCACTTGGGTGGTTCAAAGCTGGATTCTTCAGTTCCCTCACCCTCGTCTTCAGTCAAATCTCCATCAATACCTTCTGTTGTAACCTTCGATCTAACCAAATCCCAATCCACCGACACTGTGAAAGCTTCAGTCCCAGAACTGGAAAGACCCTCATCAGCTCCATCCCAACAGATCATAGTTCAACAAATGGCTTCCCTTTTGACCAGAGACGCCAATTTCACCAGAGCCCTCGCCACCGCCATTACTGGAACCATGGTAGAGAAAGAAATCTGGCGATGA 933 47.48 MEPSSTINTCLDLNFNPPPYTADESPATNTVTQLKEEAPAVLAEKLNRMSSENQKLNQMLGLVVDSYNVLKDQVIDLMIKSRKRKAGCDDCNFNRSGSGANAFTDQYCGCCSDDDSCHKRPRESSKPKVMRVLVPTPISDASLVVKDGYQWRKYGQKVTKDNPSPRAYYKCSFAPSCPVKKKVQRSAQDPSYLVATYEGEHNHMKPNSGIEYQLVGPIHLGGSKLDSSVPSPSSSVKSPSIPSVVTFDLTKSQSTDTVKASVPELERPSSAPSQQIIVQQMASLLTRDANFTRALATAITGTMVEKEIWR 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37287886 37290178 + Maker00034043 Lcy13g1830 652135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1830 310 SUPERFAMILY WRKY DNA-binding domain 143 206 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1830 310 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 303 IPR044810 GO:0003700(InterPro)
Lcy13g1830 310 Gene3D WRKY domain 134 207 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1830 310 Pfam WRKY DNA -binding domain 146 203 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1830 310 FunFam WRKY transcription factor 40 130 207 - -
Lcy13g1830 310 ProSiteProfiles WRKY domain profile. 140 206 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1830 310 SMART WRKY_cls 145 205 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1830 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1830 Lcy-Chr13:37287886 Lcy5g2291 Lcy-Chr5:45887555 7.78E-23 dispersed
Lcy13g1830 Lcy-Chr13:37287886 Lcy13g1831 Lcy-Chr13:37298530 2.66E-25 tandem
Lcy12g0520 Lcy-Chr12:6285080 Lcy13g1830 Lcy-Chr13:37287886 5.10E-57 wgd
Lcy13g1830 Lcy-Chr13:37287886 Lcy9g1888 Lcy-Chr9:43949389 8.51E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g508 . . Bda01g00763 . . . . . . . . . . . . . . Bhi04g00045 . . . . . Lcy13g1830 . . . . . . . . . . . . . . . . . . . . . . . Sed13g1970 . . . . . . . . Bhi09g03002 Tan01g3570 Cmetu07g0299 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009154 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19420 None None None None Lcy TF