Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g1831 ATGATTCCCCGTCGTAATCCAAAGGCATTTAATAATGTGGAATGTCTCCGAATAGAGCTCGAAAGGTTGAGGAAGGAGAATGAAGCTCTGAAGTTTATGCTTAGAGTTGTGAGCATGAGGAATTTGGTTTCTCAAGTGGGTGCTTTTGTAGAACATCACAATGATATGAACCAAAATTCAAACATGAGGGCGAGAGCAGACCTTCAGGTTCCGCTCGCTCTCGGGGCATCTTCCACGACCCAAGCATATGTGAGAACTAACTTCAAGGACCCTGCTTTGATGGTGAAGGATGGATATAGATGGAGAAAATATGGGCAAAAGATTACAAAGGATAATCAATCTCCTCGTGCCTATTTCAGGTGTTCTTCTCCGGGATGCCCCGTGAAAAAGAAGGTACAAAGAAGCTTGAAAGACAAGTCTATGGTCATAGTCTCATACGATGGCCACCACAACCATGAAAATGACTCTCCTTCTCCAGTTTCAACCTCTGAACAACTGTCTTCGTCTCCGTCTTCTCAAACCGTCATCCACCGTTTGCCACAGCCGCCGCCTCCGCCACTTTTAGAGGAGAGCAACCGTGTTGTTCAACCAGCGTCGCTCGATCTCGATCTCGATCTCGATCTCACTCTTTCCAGAGGCAACAAAGAAGATAGAAAAAAACCTTCCAATTTGAAAGAAGAATTGGAGGGAGAAACCCTAAACATAATCAAAGATTGTGCTGAATCTTTGACTCAAAACTCTGGTTTCACAGTGGCTTTGGCTGCTGCAGTTGCTCGTTCCATTTCTGACCAACCTAGGTCAATGGAGAGTTGA 813 45.02 MIPRRNPKAFNNVECLRIELERLRKENEALKFMLRVVSMRNLVSQVGAFVEHHNDMNQNSNMRARADLQVPLALGASSTTQAYVRTNFKDPALMVKDGYRWRKYGQKITKDNQSPRAYFRCSSPGCPVKKKVQRSLKDKSMVIVSYDGHHNHENDSPSPVSTSEQLSSSPSSQTVIHRLPQPPPPPLLEESNRVVQPASLDLDLDLDLTLSRGNKEDRKKPSNLKEELEGETLNIIKDCAESLTQNSGFTVALAAAVARSISDQPRSMES 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 37298530 37300803 + Maker00034224 Lcy13g1831 652136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g1831 270 MobiDBLite consensus disorder prediction 147 190 - -
Lcy13g1831 270 Gene3D WRKY domain 79 155 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1831 270 SUPERFAMILY WRKY DNA-binding domain 92 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1831 270 Pfam WRKY DNA -binding domain 96 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1831 270 Coils Coil 6 33 - -
Lcy13g1831 270 ProSiteProfiles WRKY domain profile. 90 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g1831 270 MobiDBLite consensus disorder prediction 155 176 - -
Lcy13g1831 270 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 263 IPR044810 GO:0003700(InterPro)
Lcy13g1831 270 SMART WRKY_cls 95 154 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g1831 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0520 Lcy-Chr12:6285080 Lcy13g1831 Lcy-Chr13:37298530 3.54E-30 dispersed
Lcy13g1831 Lcy-Chr13:37298530 Lcy9g1888 Lcy-Chr9:43949389 5.65E-29 dispersed
Lcy13g1830 Lcy-Chr13:37287886 Lcy13g1831 Lcy-Chr13:37298530 2.66E-25 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19421 None None None None Lcy TF